HCSGD entry for CPNE1
1. General information
| Official gene symbol | CPNE1 |
|---|---|
| Entrez ID | 8904 |
| Gene full name | copine I |
| Other gene symbols | COPN1 CPN1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001786 | Phosphatidylserine binding | IDA | molecular_function |
| GO:0005215 | Transporter activity | TAS | molecular_function |
| GO:0005544 | Calcium-dependent phospholipid binding | TAS | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0006629 | Lipid metabolic process | TAS | biological_process |
| GO:0016192 | Vesicle-mediated transport | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2641058242 | 0.6014771209 | 0.9586876034 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2393421948 |
| GSE13712_SHEAR | Up | 0.3269554720 |
| GSE13712_STATIC | Up | 0.3388956091 |
| GSE19018 | Up | 0.0235021750 |
| GSE19899_A1 | Up | 0.0422122733 |
| GSE19899_A2 | Up | 0.0096025261 |
| PubMed_21979375_A1 | Up | 0.4987656372 |
| PubMed_21979375_A2 | Up | 0.0643927150 |
| GSE35957 | Down | -0.8548664381 |
| GSE36640 | Down | -0.0264454707 |
| GSE54402 | Down | -0.0543677559 |
| GSE9593 | Down | -0.0351112144 |
| GSE43922 | - | - |
| GSE24585 | - | - |
| GSE37065 | - | - |
| GSE28863_A1 | Up | 0.1632656159 |
| GSE28863_A2 | Up | 0.1421361309 |
| GSE28863_A3 | Down | -0.5898428977 |
| GSE28863_A4 | Up | 0.1373243148 |
| GSE48662 | Up | 0.1613878164 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-let-7d-5p | MIMAT0000065 | MIRT032109 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-1229-3p | MIMAT0005584 | MIRT036389 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-500a-5p | MIMAT0004773 | MIRT037995 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-532-5p | MIMAT0002888 | MIRT040983 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-378a-3p | MIMAT0000732 | MIRT043882 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
