HCSGD entry for SCARF1

1. General information

Official gene symbolSCARF1
Entrez ID8578
Gene full namescavenger receptor class F, member 1
Other gene symbolsSREC SREC-I SREC1
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in PPI subnetwork.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0004888Transmembrane signaling receptor activityTASmolecular_function
GO:0005044Scavenger receptor activityIDAmolecular_function
GO:0005886Plasma membraneTAScellular_component
GO:0006707Cholesterol catabolic processICbiological_process
GO:0006898Receptor-mediated endocytosisTASbiological_process
GO:0007155Cell adhesionIEAbiological_process
GO:0007165Signal transductionTASbiological_process
GO:0010976Positive regulation of neuron projection developmentISSbiological_process
GO:0016021Integral component of membraneIDAcellular_component
GO:0016322Neuron remodelingISSbiological_process
GO:0016358Dendrite developmentIEAbiological_process
GO:0030169Low-density lipoprotein particle bindingIDAmolecular_function
GO:0030666Endocytic vesicle membraneTAScellular_component
GO:0048680Positive regulation of axon regenerationISSbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.12380826720.96218333650.71889144431.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Down-0.0203952831
GSE13712_SHEARUp0.3152314562
GSE13712_STATICUp0.0838531128
GSE19018Up0.0623868483
GSE19899_A1Up0.0523785471
GSE19899_A2Up0.1666885809
PubMed_21979375_A1Up0.3627810216
PubMed_21979375_A2Up0.2279725597
GSE35957Up0.1069924343
GSE36640Up0.1768041310
GSE54402Up0.1552325213
GSE9593Up0.0224905411
GSE43922Up0.0529977504
GSE24585Up0.0490224738
GSE37065Down-0.0344052757
GSE28863_A1Up0.0768618144
GSE28863_A2Up0.0839261464
GSE28863_A3Up0.5178760669
GSE28863_A4Up0.1072108530
GSE48662Down-0.0357684371

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

    • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-548qMIMAT0011163MIRT052655CLASHFunctional MTI (Weak)23622248
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    • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.