HCSGD entry for RRP1
1. General information
| Official gene symbol | RRP1 |
|---|---|
| Entrez ID | 8568 |
| Gene full name | ribosomal RNA processing 1 homolog (S. cerevisiae) |
| Other gene symbols | D21S2056E NNP-1 NOP52 RRP1A |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005634 | Nucleus | TAS | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0006364 | RRNA processing | IEA | biological_process |
| GO:0030688 | Preribosome, small subunit precursor | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2444118688 | 0.7582639793 | 0.9325547471 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0040736147 |
| GSE13712_SHEAR | Up | 0.0879268054 |
| GSE13712_STATIC | Up | 0.2933088677 |
| GSE19018 | Down | -0.1139871500 |
| GSE19899_A1 | Up | 0.1023579571 |
| GSE19899_A2 | Up | 0.4126654853 |
| PubMed_21979375_A1 | Up | 0.5132746136 |
| PubMed_21979375_A2 | Down | -0.0229898993 |
| GSE35957 | Down | -0.2273251511 |
| GSE36640 | Down | -0.0982976340 |
| GSE54402 | Up | 0.1006171610 |
| GSE9593 | Down | -0.1164316915 |
| GSE43922 | Up | 0.2688439127 |
| GSE24585 | Down | -0.7372179489 |
| GSE37065 | Down | -0.0030696900 |
| GSE28863_A1 | Down | -0.0238434174 |
| GSE28863_A2 | Down | -0.0280884636 |
| GSE28863_A3 | Up | 0.4532674313 |
| GSE28863_A4 | Up | 0.1527025338 |
| GSE48662 | Up | 0.1433328752 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-615-3p | MIMAT0003283 | MIRT040457 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92b-3p | MIMAT0003218 | MIRT040667 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-423-3p | MIMAT0001340 | MIRT042587 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-149-5p | MIMAT0000450 | MIRT045681 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
