HCSGD entry for MICALL1
1. General information
| Official gene symbol | MICALL1 |
|---|---|
| Entrez ID | 85377 |
| Gene full name | MICAL-like 1 |
| Other gene symbols | MICAL-L1 MIRAB13 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005769 | Early endosome | IDA | cellular_component |
| GO:0005770 | Late endosome | IDA | cellular_component |
| GO:0005802 | Trans-Golgi network | IDA | cellular_component |
| GO:0006612 | Protein targeting to membrane | IMP | biological_process |
| GO:0006897 | Endocytosis | IMP | biological_process |
| GO:0006898 | Receptor-mediated endocytosis | IMP | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0017137 | Rab GTPase binding | IEA IPI | molecular_function |
| GO:0019898 | Extrinsic component of membrane | IDA | cellular_component |
| GO:0031175 | Neuron projection development | ISS | biological_process |
| GO:0031902 | Late endosome membrane | IEA | cellular_component |
| GO:0032458 | Slow endocytic recycling | IMP | biological_process |
| GO:0036010 | Protein localization to endosome | IMP | biological_process |
| GO:0042802 | Identical protein binding | IPI | molecular_function |
| GO:0055038 | Recycling endosome membrane | IDA | cellular_component |
| GO:0070300 | Phosphatidic acid binding | IDA | molecular_function |
| GO:0097320 | Membrane tubulation | IDA | biological_process |
| GO:1990126 | Retrograde transport, endosome to plasma membrane | IMP | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0740741309 | 0.3065545648 | 0.5781856550 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1482690961 |
| GSE13712_SHEAR | Up | 0.5539415019 |
| GSE13712_STATIC | Up | 0.3331982958 |
| GSE19018 | Down | -0.3231237918 |
| GSE19899_A1 | Up | 0.0532758261 |
| GSE19899_A2 | Up | 0.6621817263 |
| PubMed_21979375_A1 | Up | 1.7345005549 |
| PubMed_21979375_A2 | Up | 1.1995379297 |
| GSE35957 | Down | -0.4421237780 |
| GSE36640 | Down | -0.5488461581 |
| GSE54402 | Up | 0.3861918261 |
| GSE9593 | Up | 0.0108363507 |
| GSE43922 | Up | 0.2606295351 |
| GSE24585 | Down | -0.6034049569 |
| GSE37065 | Down | -0.0302514234 |
| GSE28863_A1 | Down | -0.1084585658 |
| GSE28863_A2 | Down | -0.4489952089 |
| GSE28863_A3 | Up | 0.1268427836 |
| GSE28863_A4 | Down | -0.0495250116 |
| GSE48662 | Up | 0.2067267256 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-7-5p | MIMAT0000252 | MIRT025812 | Microarray | Functional MTI (Weak) | 19073608 |
| hsa-miR-1301-3p | MIMAT0005797 | MIRT035961 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-423-5p | MIMAT0004748 | MIRT038075 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-423-3p | MIMAT0001340 | MIRT042642 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-93-5p | MIMAT0000093 | MIRT048743 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
