HCSGD entry for HIST1H2BK
1. General information
| Official gene symbol | HIST1H2BK |
|---|---|
| Entrez ID | 85236 |
| Gene full name | histone cluster 1, H2bk |
| Other gene symbols | H2B/S H2BFAiii H2BFT H2BK |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000786 | Nucleosome | IEA | cellular_component |
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0006334 | Nucleosome assembly | IEA | biological_process |
| GO:0042742 | Defense response to bacterium | IEA | biological_process |
| GO:0046982 | Protein heterodimerization activity | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0000293834 | 0.9936137495 | 0.0154792453 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 3.4877657239 |
| GSE13712_SHEAR | Up | 0.5401364448 |
| GSE13712_STATIC | Up | 1.3146802100 |
| GSE19018 | Up | 0.3305882428 |
| GSE19899_A1 | Up | 1.0217886442 |
| GSE19899_A2 | Up | 1.0338819255 |
| PubMed_21979375_A1 | Up | 1.1987450186 |
| PubMed_21979375_A2 | Up | 0.7918817454 |
| GSE35957 | Up | 0.9098048752 |
| GSE36640 | Up | 4.1863332296 |
| GSE54402 | Up | 0.1633234219 |
| GSE9593 | Up | 1.2633424764 |
| GSE43922 | Up | 0.4970773305 |
| GSE24585 | Up | 2.1540295558 |
| GSE37065 | Up | 0.8163441552 |
| GSE28863_A1 | Down | -0.3549540053 |
| GSE28863_A2 | Up | 0.3511735410 |
| GSE28863_A3 | Down | -0.1163047873 |
| GSE28863_A4 | Down | -0.1566879099 |
| GSE48662 | Up | 0.8271775054 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-98-5p | MIMAT0000096 | MIRT027811 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-1292-5p | MIMAT0005943 | MIRT035830 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-1180-3p | MIMAT0005825 | MIRT035923 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-423-5p | MIMAT0004748 | MIRT038110 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-424-5p | MIMAT0001341 | MIRT042437 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-324-3p | MIMAT0000762 | MIRT042857 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-320a | MIMAT0000510 | MIRT044421 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-186-5p | MIMAT0000456 | MIRT045125 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-138-5p | MIMAT0000430 | MIRT045835 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-31-5p | MIMAT0000089 | MIRT049866 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT051151 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-15a-5p | MIMAT0000068 | MIRT051316 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
