HCSGD entry for CIRH1A
1. General information
| Official gene symbol | CIRH1A |
|---|---|
| Entrez ID | 84916 |
| Gene full name | cirrhosis, autosomal recessive 1A (cirhin) |
| Other gene symbols | CIRHIN NAIC TEX292 UTP4 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003674 | Molecular_function | ND | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | IDA | biological_process |
| GO:0030490 | Maturation of SSU-rRNA | IMP | biological_process |
| GO:0034455 | T-UTP complex | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0434057711 | 0.4358771513 | 0.4636701705 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.5101402268 |
| GSE13712_SHEAR | Up | 0.0921754916 |
| GSE13712_STATIC | Up | 0.2329945599 |
| GSE19018 | Down | -0.8888685465 |
| GSE19899_A1 | Up | 0.2520596828 |
| GSE19899_A2 | Up | 0.4275191799 |
| PubMed_21979375_A1 | Up | 1.1838669775 |
| PubMed_21979375_A2 | Up | 0.7212768051 |
| GSE35957 | Down | -0.1475130157 |
| GSE36640 | Down | -0.2869360515 |
| GSE54402 | Up | 0.6705303923 |
| GSE9593 | Down | -0.1100490455 |
| GSE43922 | Up | 0.3032895540 |
| GSE24585 | Down | -0.3845959250 |
| GSE37065 | Up | 0.0153841113 |
| GSE28863_A1 | Down | -0.1690418626 |
| GSE28863_A2 | Up | 0.3858874888 |
| GSE28863_A3 | Down | -0.7434159529 |
| GSE28863_A4 | Up | 0.2052582432 |
| GSE48662 | Down | -0.0986827047 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-16-5p | MIMAT0000069 | MIRT031534 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-455-3p | MIMAT0004784 | MIRT037816 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-106b-3p | MIMAT0004672 | MIRT038574 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-7-1-3p | MIMAT0004553 | MIRT038680 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-100-5p | MIMAT0000098 | MIRT048515 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-99a-5p | MIMAT0000097 | MIRT048617 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7a-5p | MIMAT0000062 | MIRT052372 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
