HCSGD entry for TNRC18
1. General information
| Official gene symbol | TNRC18 |
|---|---|
| Entrez ID | 84629 |
| Gene full name | trinucleotide repeat containing 18 |
| Other gene symbols | CAGL79 TNRC18A |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003677 | DNA binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.5897588124 | 0.5798170700 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1576497646 |
| GSE13712_SHEAR | Up | 0.0437254468 |
| GSE13712_STATIC | Down | -0.0496671410 |
| GSE19018 | Up | 0.0260644505 |
| GSE19899_A1 | Down | -0.0739456182 |
| GSE19899_A2 | Up | 0.0109112454 |
| PubMed_21979375_A1 | Down | -0.3589136061 |
| PubMed_21979375_A2 | Down | -0.0032347655 |
| GSE35957 | Down | -0.1327494680 |
| GSE36640 | Down | -0.2033430541 |
| GSE54402 | Down | -0.2095310745 |
| GSE9593 | Down | -0.0334447588 |
| GSE43922 | Up | 0.0731371206 |
| GSE24585 | Up | 0.5303171544 |
| GSE37065 | Down | -0.1607211598 |
| GSE28863_A1 | Down | -0.1761691174 |
| GSE28863_A2 | Up | 0.1285848435 |
| GSE28863_A3 | Up | 0.3368812323 |
| GSE28863_A4 | Up | 0.1612689065 |
| GSE48662 | Up | 0.5243338911 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-183-5p | MIMAT0000261 | MIRT024996 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-34a-5p | MIMAT0000255 | MIRT025375 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-1307-3p | MIMAT0005951 | MIRT035816 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-455-3p | MIMAT0004784 | MIRT037814 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT040219 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049088 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
