HCSGD entry for COL25A1
1. General information
| Official gene symbol | COL25A1 |
|---|---|
| Entrez ID | 84570 |
| Gene full name | collagen, type XXV, alpha 1 |
| Other gene symbols | AMY CLAC CLAC-P CLACP |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001540 | Beta-amyloid binding | IDA | molecular_function |
| GO:0005576 | Extracellular region | IDA TAS | cellular_component |
| GO:0005581 | Collagen | IEA | cellular_component |
| GO:0005615 | Extracellular space | IDA | cellular_component |
| GO:0005788 | Endoplasmic reticulum lumen | TAS | cellular_component |
| GO:0005886 | Plasma membrane | TAS | cellular_component |
| GO:0005887 | Integral component of plasma membrane | IDA | cellular_component |
| GO:0008201 | Heparin binding | IDA | molecular_function |
| GO:0016021 | Integral component of membrane | NAS | cellular_component |
| GO:0022617 | Extracellular matrix disassembly | TAS | biological_process |
| GO:0030198 | Extracellular matrix organization | TAS | biological_process |
| GO:0030574 | Collagen catabolic process | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.6940271228 | 0.7652177501 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0698312616 |
| GSE13712_SHEAR | Down | -0.1321355989 |
| GSE13712_STATIC | Down | -0.0559029840 |
| GSE19018 | Up | 0.1009697089 |
| GSE19899_A1 | Up | 0.0208653335 |
| GSE19899_A2 | Up | 0.0015664789 |
| PubMed_21979375_A1 | Up | 0.0298056214 |
| PubMed_21979375_A2 | Down | -0.0340993261 |
| GSE35957 | Down | -0.1853458553 |
| GSE36640 | Up | 0.5417611775 |
| GSE54402 | Up | 0.1476662140 |
| GSE9593 | Down | -0.0090417667 |
| GSE43922 | Up | 0.0424522927 |
| GSE24585 | Down | -0.3099342909 |
| GSE37065 | Down | -0.0202775908 |
| GSE28863_A1 | Up | 0.0806432276 |
| GSE28863_A2 | Down | -0.0367043351 |
| GSE28863_A3 | Up | 0.1870786443 |
| GSE28863_A4 | Up | 0.0546999245 |
| GSE48662 | Down | -0.0134013904 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirTarBase
- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
