HCSGD entry for LSMD1

1. General information

Official gene symbolLSMD1
Entrez ID84316
Gene full nameLSM domain containing 1
Other gene symbolsPFAAP2
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in PPI subnetwork.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0005515Protein bindingIPImolecular_function
GO:0005681Spliceosomal complexIEAcellular_component
GO:0006397MRNA processingIEAbiological_process
GO:0008380RNA splicingIEAbiological_process
GO:0017070U6 snRNA bindingNASmolecular_function
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.88838969260.03878411530.99999024730.3711195929

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.3564692529
GSE13712_SHEARDown-0.6381274435
GSE13712_STATICDown-0.3660983037
GSE19018Up0.3043091841
GSE19899_A1Down-0.8269516105
GSE19899_A2Up0.1351008262
PubMed_21979375_A1Up0.3469985745
PubMed_21979375_A2Down-0.5539516974
GSE35957Down-0.0063550027
GSE36640Up0.0198151348
GSE54402Down-0.0279180202
GSE9593Down-0.0311198608
GSE43922Down-0.2565794720
GSE24585Up0.0906514862
GSE37065Down-0.4214874368
GSE28863_A1Down-0.3685815552
GSE28863_A2Down-0.4674178453
GSE28863_A3Up0.0832920295
GSE28863_A4Up0.0083237755
GSE48662Down-0.0268945255

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

    • mirTarBase
No target information from mirTarBase
    • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.