HCSGD entry for BFSP2
1. General information
| Official gene symbol | BFSP2 |
|---|---|
| Entrez ID | 8419 |
| Gene full name | beaded filament structural protein 2, phakinin |
| Other gene symbols | CP47 CP49 CTRCT12 LIFL-L PHAKOSIN |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005200 | Structural constituent of cytoskeleton | TAS | molecular_function |
| GO:0005212 | Structural constituent of eye lens | IEA | molecular_function |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005882 | Intermediate filament | IEA | cellular_component |
| GO:0005886 | Plasma membrane | IDA | cellular_component |
| GO:0007601 | Visual perception | IEA | biological_process |
| GO:0045104 | Intermediate filament cytoskeleton organization | IEA | biological_process |
| GO:0048469 | Cell maturation | IEA | biological_process |
| GO:0050896 | Response to stimulus | IEA | biological_process |
| GO:0070307 | Lens fiber cell development | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.6746543406 | 0.8331467839 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0462513980 |
| GSE13712_SHEAR | Down | -0.0050967941 |
| GSE13712_STATIC | Down | -0.0170646467 |
| GSE19018 | Down | -0.1234721809 |
| GSE19899_A1 | Down | -0.1112176839 |
| GSE19899_A2 | Up | 0.0512408950 |
| PubMed_21979375_A1 | Up | 0.4297640826 |
| PubMed_21979375_A2 | Up | 0.0669164493 |
| GSE35957 | Up | 0.2729481242 |
| GSE36640 | Down | -0.0594009817 |
| GSE54402 | Up | 0.0087295092 |
| GSE9593 | Up | 0.1325081538 |
| GSE43922 | Down | -0.0421880548 |
| GSE24585 | Down | -0.1071287050 |
| GSE37065 | Up | 0.0115494382 |
| GSE28863_A1 | Down | -0.0664771900 |
| GSE28863_A2 | Down | -0.0117288674 |
| GSE28863_A3 | Up | 0.0965909492 |
| GSE28863_A4 | Up | 0.1642580633 |
| GSE48662 | Up | 0.0543039331 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT017004 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
