HCSGD entry for CHD6
1. General information
| Official gene symbol | CHD6 |
|---|---|
| Entrez ID | 84181 |
| Gene full name | chromodomain helicase DNA binding protein 6 |
| Other gene symbols | CHD5 RIGB |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0003682 | Chromatin binding | NAS | molecular_function |
| GO:0005524 | ATP binding | IEA | molecular_function |
| GO:0005634 | Nucleus | IEA NAS | cellular_component |
| GO:0006338 | Chromatin remodeling | NAS | biological_process |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | NAS | biological_process |
| GO:0007399 | Nervous system development | NAS | biological_process |
| GO:0008026 | ATP-dependent helicase activity | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0923157289 | 0.5611934501 | 0.6382158351 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1429791491 |
| GSE13712_SHEAR | Up | 0.2415342935 |
| GSE13712_STATIC | Up | 0.0212628934 |
| GSE19018 | Up | 0.6101332124 |
| GSE19899_A1 | Up | 0.0121806031 |
| GSE19899_A2 | Down | -0.0231266077 |
| PubMed_21979375_A1 | Down | -0.6545907336 |
| PubMed_21979375_A2 | Down | -0.1069190666 |
| GSE35957 | Up | 0.1821593110 |
| GSE36640 | Up | 0.2883256393 |
| GSE54402 | Down | -0.1886977777 |
| GSE9593 | Up | 0.0638704672 |
| GSE43922 | Down | -0.3718300580 |
| GSE24585 | Up | 0.3247847920 |
| GSE37065 | Up | 0.1882421918 |
| GSE28863_A1 | Up | 1.0675390661 |
| GSE28863_A2 | Up | 0.8199485599 |
| GSE28863_A3 | Down | -0.3763733129 |
| GSE28863_A4 | Down | -0.1381165781 |
| GSE48662 | Up | 0.1470959473 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT016929 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
