HCSGD entry for B3GNT5
1. General information
| Official gene symbol | B3GNT5 |
|---|---|
| Entrez ID | 84002 |
| Gene full name | UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 |
| Other gene symbols | B3GN-T5 beta3Gn-T5 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000139 | Golgi membrane | TAS | cellular_component |
| GO:0005622 | Intracellular | IDA | cellular_component |
| GO:0006486 | Protein glycosylation | IEA TAS | biological_process |
| GO:0007417 | Central nervous system development | IDA | biological_process |
| GO:0008378 | Galactosyltransferase activity | IEA | molecular_function |
| GO:0008457 | Beta-galactosyl-N-acetylglucosaminylgalactosylglucosyl-ceramide beta-1,3-acetylglucosaminyltransferase activity | IDA | molecular_function |
| GO:0008917 | Lipopolysaccharide N-acetylglucosaminyltransferase activity | IEA | molecular_function |
| GO:0009247 | Glycolipid biosynthetic process | TAS | biological_process |
| GO:0016020 | Membrane | IEA | cellular_component |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0016266 | O-glycan processing | TAS | biological_process |
| GO:0043687 | Post-translational protein modification | TAS | biological_process |
| GO:0044267 | Cellular protein metabolic process | TAS | biological_process |
| GO:0047256 | Lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase activity | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0116627902 | 0.3748695186 | 0.2718557522 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2288815761 |
| GSE13712_SHEAR | Up | 1.3341762364 |
| GSE13712_STATIC | Up | 0.8127621903 |
| GSE19018 | Down | -0.1599240221 |
| GSE19899_A1 | Up | 0.1944379225 |
| GSE19899_A2 | Up | 0.4238368878 |
| PubMed_21979375_A1 | Up | 2.0203238567 |
| PubMed_21979375_A2 | Up | 0.6205731778 |
| GSE35957 | Down | -0.3145225245 |
| GSE36640 | Down | -2.4789892316 |
| GSE54402 | Up | 1.1639734678 |
| GSE9593 | Down | -0.1215981045 |
| GSE43922 | Up | 0.8596448822 |
| GSE24585 | Down | -0.8452269095 |
| GSE37065 | Up | 0.0977803970 |
| GSE28863_A1 | Down | -0.0907800114 |
| GSE28863_A2 | Down | -0.1018284922 |
| GSE28863_A3 | Up | 0.2998548428 |
| GSE28863_A4 | Down | -0.0651137746 |
| GSE48662 | Up | 0.0229894739 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT019068 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-30b-5p | MIMAT0000420 | MIRT023460 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-215-5p | MIMAT0000272 | MIRT024816 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-192-5p | MIMAT0000222 | MIRT026906 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-21-5p | MIMAT0000076 | MIRT031039 | Microarray | Functional MTI (Weak) | 18591254 |
| hsa-miR-10a-5p | MIMAT0000253 | MIRT047723 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-30c-5p | MIMAT0000244 | MIRT047995 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
