HCSGD entry for SF3B5
1. General information
| Official gene symbol | SF3B5 |
|---|---|
| Entrez ID | 83443 |
| Gene full name | splicing factor 3b, subunit 5, 10kDa |
| Other gene symbols | SF3b10 Ysf3 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000398 | MRNA splicing, via spliceosome | TAS | biological_process |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005654 | Nucleoplasm | TAS | cellular_component |
| GO:0005689 | U12-type spliceosomal complex | IDA | cellular_component |
| GO:0008380 | RNA splicing | TAS | biological_process |
| GO:0010467 | Gene expression | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.6929021808 | 0.0965420121 | 0.9999902473 | 0.5920508621 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2715886940 |
| GSE13712_SHEAR | Down | -0.2791564298 |
| GSE13712_STATIC | Down | -0.0104163678 |
| GSE19018 | Down | -0.0711054761 |
| GSE19899_A1 | Down | -0.0439283122 |
| GSE19899_A2 | Up | 0.2839451146 |
| PubMed_21979375_A1 | Up | 1.0429295305 |
| PubMed_21979375_A2 | Down | -0.0936091021 |
| GSE35957 | Down | -0.3441980681 |
| GSE36640 | Down | -0.3292096007 |
| GSE54402 | Up | 0.0013138355 |
| GSE9593 | Down | -0.1974275171 |
| GSE43922 | Up | 0.0402880645 |
| GSE24585 | Down | -0.7774539433 |
| GSE37065 | Down | -0.1500479134 |
| GSE28863_A1 | Up | 0.5513216253 |
| GSE28863_A2 | Up | 0.1202282934 |
| GSE28863_A3 | Down | -0.4745181904 |
| GSE28863_A4 | Down | -0.2680950447 |
| GSE48662 | Down | -0.2658116136 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1307-3p | MIMAT0005951 | MIRT035819 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
