HCSGD entry for RBM10
1. General information
| Official gene symbol | RBM10 |
|---|---|
| Entrez ID | 8241 |
| Gene full name | RNA binding motif protein 10 |
| Other gene symbols | DXS8237E GPATC9 GPATCH9 S1-1 TARPS ZRANB5 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000122 | Negative regulation of transcription from RNA polymerase II promoter | IEA | biological_process |
| GO:0000166 | Nucleotide binding | IEA | molecular_function |
| GO:0003723 | RNA binding | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0006397 | MRNA processing | IEA | biological_process |
| GO:0008150 | Biological_process | ND | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0008285 | Negative regulation of cell proliferation | IEA | biological_process |
| GO:0008380 | RNA splicing | IEA | biological_process |
| GO:0032403 | Protein complex binding | IDA | molecular_function |
| GO:0034393 | Positive regulation of smooth muscle cell apoptotic process | IEA | biological_process |
| GO:0042802 | Identical protein binding | IPI | molecular_function |
| GO:0070935 | 3'-UTR-mediated mRNA stabilization | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8436270430 | 0.1048907564 | 0.9999902473 | 0.6208296829 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0924575934 |
| GSE13712_SHEAR | Down | -0.2071027351 |
| GSE13712_STATIC | Down | -0.0490077067 |
| GSE19018 | Down | -0.0396212593 |
| GSE19899_A1 | Down | -0.5390828761 |
| GSE19899_A2 | Down | -0.3335849471 |
| PubMed_21979375_A1 | Up | 0.4272252926 |
| PubMed_21979375_A2 | Up | 0.2481862477 |
| GSE35957 | Down | -0.9138784719 |
| GSE36640 | Down | -1.0575166959 |
| GSE54402 | Up | 0.0889555922 |
| GSE9593 | Down | -0.6741905503 |
| GSE43922 | Up | 0.0498426048 |
| GSE24585 | Down | -0.2525701879 |
| GSE37065 | Down | -0.0647227351 |
| GSE28863_A1 | Up | 0.1517171556 |
| GSE28863_A2 | Up | 0.0093734549 |
| GSE28863_A3 | Up | 0.0241121616 |
| GSE28863_A4 | Up | 0.0706652378 |
| GSE48662 | Up | 0.4421578699 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1226-3p | MIMAT0005577 | MIRT036471 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT039700 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92b-3p | MIMAT0003218 | MIRT040646 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-324-3p | MIMAT0000762 | MIRT042904 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-186-5p | MIMAT0000456 | MIRT045311 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-222-3p | MIMAT0000279 | MIRT046742 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049482 | CLASH//qRT-PCR | Functional MTI (Weak) | 23622248 |
| hsa-miR-20a-5p | MIMAT0000075 | MIRT050535 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
