HCSGD entry for SLIRP
1. General information
| Official gene symbol | SLIRP |
|---|---|
| Entrez ID | 81892 |
| Gene full name | SRA stem-loop interacting RNA binding protein |
| Other gene symbols | C14orf156 DC50 PD04872 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000166 | Nucleotide binding | IEA | molecular_function |
| GO:0000961 | Negative regulation of mitochondrial RNA catabolic process | IEA | biological_process |
| GO:0003676 | Nucleic acid binding | IEA | molecular_function |
| GO:0003723 | RNA binding | IEA | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005739 | Mitochondrion | IDA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
| GO:0030529 | Ribonucleoprotein complex | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1039368983 | 0.6600513506 | 0.6701482488 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2506660605 |
| GSE13712_SHEAR | Up | 0.2578240640 |
| GSE13712_STATIC | Up | 0.2984983019 |
| GSE19018 | Down | -0.0015640515 |
| GSE19899_A1 | Up | 0.4000024526 |
| GSE19899_A2 | Up | 0.4805348357 |
| PubMed_21979375_A1 | Up | 0.3482907280 |
| PubMed_21979375_A2 | Up | 0.5944579452 |
| GSE35957 | Down | -0.5199684983 |
| GSE36640 | Down | -0.4111328576 |
| GSE54402 | Up | 0.4315807676 |
| GSE9593 | Down | -0.3882477553 |
| GSE43922 | Up | 0.1751289645 |
| GSE24585 | Down | -0.2440788403 |
| GSE37065 | Up | 0.0428779585 |
| GSE28863_A1 | Down | -0.3591750992 |
| GSE28863_A2 | Down | -0.1687474573 |
| GSE28863_A3 | Up | 0.1183777698 |
| GSE28863_A4 | Up | 0.1763573023 |
| GSE48662 | Down | -0.1470107737 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-16-5p | MIMAT0000069 | MIRT031680 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-1914-5p | MIMAT0007889 | MIRT035796 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
