HCSGD entry for VMP1
1. General information
| Official gene symbol | VMP1 |
|---|---|
| Entrez ID | 81671 |
| Gene full name | vacuole membrane protein 1 |
| Other gene symbols | EPG3 TANGO5 TMEM49 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000407 | Pre-autophagosomal structure | IEA | cellular_component |
| GO:0000421 | Autophagic vacuole membrane | IEA ISS | cellular_component |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005783 | Endoplasmic reticulum | IDA | cellular_component |
| GO:0005886 | Plasma membrane | IEA | cellular_component |
| GO:0006914 | Autophagy | IEA | biological_process |
| GO:0007566 | Embryo implantation | IEA | biological_process |
| GO:0010506 | Regulation of autophagy | IEA ISS | biological_process |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0016337 | Cell-cell adhesion | IMP | biological_process |
| GO:0033116 | Endoplasmic reticulum-Golgi intermediate compartment membrane | IEA | cellular_component |
| GO:0034329 | Cell junction assembly | IMP | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9247307625 | 0.0055469321 | 0.9999902473 | 0.1508272727 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1422116820 |
| GSE13712_SHEAR | Up | 1.1021699467 |
| GSE13712_STATIC | Up | 0.7102868854 |
| GSE19018 | Down | -1.2494184987 |
| GSE19899_A1 | Down | -0.0512764964 |
| GSE19899_A2 | Down | -0.9117547592 |
| PubMed_21979375_A1 | Down | -0.8495653488 |
| PubMed_21979375_A2 | Down | -0.3701102701 |
| GSE35957 | Down | -1.4290190095 |
| GSE36640 | Up | 0.0264049570 |
| GSE54402 | Up | 0.3825054223 |
| GSE9593 | Down | -0.5318418794 |
| GSE43922 | - | - |
| GSE24585 | - | - |
| GSE37065 | - | - |
| GSE28863_A1 | Down | -0.5613593519 |
| GSE28863_A2 | Down | -0.6698269939 |
| GSE28863_A3 | Down | -0.4056559405 |
| GSE28863_A4 | Down | -0.2352121881 |
| GSE48662 | Down | -0.3741147627 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-210-3p | MIMAT0000267 | MIRT006663 | Luciferase reporter assay//Microarray//Western blot | Functional MTI | 22144109 |
| hsa-miR-1 | MIMAT0000416 | MIRT023611 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031480 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-296-3p | MIMAT0004679 | MIRT038376 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-25-3p | MIMAT0000081 | MIRT050331 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
