HCSGD entry for TDRD3
1. General information
| Official gene symbol | TDRD3 |
|---|---|
| Entrez ID | 81550 |
| Gene full name | tudor domain containing 3 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003682 | Chromatin binding | IDA | molecular_function |
| GO:0003713 | Transcription coactivator activity | IDA | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0016568 | Chromatin modification | IEA | biological_process |
| GO:0035064 | Methylated histone residue binding | IDA | molecular_function |
| GO:0035145 | Exon-exon junction complex | IDA | cellular_component |
| GO:2001141 | Regulation of RNA biosynthetic process | IDA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9934898636 | 0.0263090042 | 0.9999902473 | 0.3112266517 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0361003248 |
| GSE13712_SHEAR | Down | -0.2974836696 |
| GSE13712_STATIC | Down | -0.0305216762 |
| GSE19018 | Down | -0.1832555293 |
| GSE19899_A1 | Down | -0.0929014150 |
| GSE19899_A2 | Down | -0.6185731976 |
| PubMed_21979375_A1 | Down | -0.3244117375 |
| PubMed_21979375_A2 | Down | -0.3648113732 |
| GSE35957 | Down | -0.2169340790 |
| GSE36640 | Down | -0.7488261712 |
| GSE54402 | Down | -0.3825435553 |
| GSE9593 | Down | -0.2109292805 |
| GSE43922 | Down | -0.0586313397 |
| GSE24585 | Down | -0.2345193675 |
| GSE37065 | Up | 0.0628133231 |
| GSE28863_A1 | Up | 0.0416528836 |
| GSE28863_A2 | Down | -0.4028019309 |
| GSE28863_A3 | Down | -0.4756526465 |
| GSE28863_A4 | Down | -0.0090051067 |
| GSE48662 | Down | -0.1454713349 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-20a-5p | MIMAT0000075 | MIRT050553 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT051189 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
