HCSGD entry for RPF1
1. General information
| Official gene symbol | RPF1 |
|---|---|
| Entrez ID | 80135 |
| Gene full name | ribosome production factor 1 homolog (S. cerevisiae) |
| Other gene symbols | BXDC5 RP11-118B23.1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003723 | RNA binding | IDA | molecular_function |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0006364 | RRNA processing | IEA | biological_process |
| GO:0019843 | RRNA binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.5559297025 | 0.5327590631 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0456552909 |
| GSE13712_SHEAR | Up | 0.0209365786 |
| GSE13712_STATIC | Down | -0.0541203857 |
| GSE19018 | Down | -0.0350723121 |
| GSE19899_A1 | Up | 0.0776424425 |
| GSE19899_A2 | Down | -0.1094089300 |
| PubMed_21979375_A1 | Up | 0.2170159158 |
| PubMed_21979375_A2 | Up | 0.1530106609 |
| GSE35957 | Down | -0.0168055196 |
| GSE36640 | Up | 0.1829916298 |
| GSE54402 | Up | 0.1099934881 |
| GSE9593 | Down | -0.3051431249 |
| GSE43922 | Down | -0.0273644369 |
| GSE24585 | Down | -0.2586044209 |
| GSE37065 | Up | 0.3086924466 |
| GSE28863_A1 | Up | 0.1352040309 |
| GSE28863_A2 | Up | 0.5432488621 |
| GSE28863_A3 | Up | 0.1646169157 |
| GSE28863_A4 | Down | -0.4125205767 |
| GSE48662 | Down | -0.2181388808 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-296-3p | MIMAT0004679 | MIRT038402 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
