HCSGD entry for SYNDIG1
1. General information
| Official gene symbol | SYNDIG1 |
|---|---|
| Entrez ID | 79953 |
| Gene full name | synapse differentiation inducing 1 |
| Other gene symbols | C20orf39 DSPC2 IFITMD5 TMEM90B |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005887 | Integral component of plasma membrane | ISS | cellular_component |
| GO:0006886 | Intracellular protein transport | ISS | biological_process |
| GO:0009607 | Response to biotic stimulus | IEA | biological_process |
| GO:0014069 | Postsynaptic density | ISS | cellular_component |
| GO:0030054 | Cell junction | IEA | cellular_component |
| GO:0031901 | Early endosome membrane | ISS | cellular_component |
| GO:0035254 | Glutamate receptor binding | ISS | molecular_function |
| GO:0042803 | Protein homodimerization activity | ISS | molecular_function |
| GO:0043197 | Dendritic spine | ISS | cellular_component |
| GO:0043198 | Dendritic shaft | ISS | cellular_component |
| GO:0044297 | Cell body | ISS | cellular_component |
| GO:0045211 | Postsynaptic membrane | IEA | cellular_component |
| GO:0051965 | Positive regulation of synapse assembly | IDA | biological_process |
| GO:0060076 | Excitatory synapse | ISS | cellular_component |
| GO:0097091 | Synaptic vesicle clustering | ISS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1960581133 | 0.4633377987 | 0.8576219638 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1309970720 |
| GSE13712_SHEAR | Up | 0.3759826438 |
| GSE13712_STATIC | Up | 0.0244014502 |
| GSE19018 | Down | -0.0693258212 |
| GSE19899_A1 | Up | 0.0249654984 |
| GSE19899_A2 | Up | 0.0200613626 |
| PubMed_21979375_A1 | Up | 0.1031542057 |
| PubMed_21979375_A2 | Down | -0.1594663953 |
| GSE35957 | Up | 0.1049883516 |
| GSE36640 | Up | 0.1436274568 |
| GSE54402 | Up | 0.7188575455 |
| GSE9593 | Up | 0.0943075050 |
| GSE43922 | Up | 0.1792726012 |
| GSE24585 | Down | -0.0367853703 |
| GSE37065 | Down | -0.1837333272 |
| GSE28863_A1 | Down | -0.0620639161 |
| GSE28863_A2 | Down | -0.2927890032 |
| GSE28863_A3 | Up | 0.3763021790 |
| GSE28863_A4 | Down | -0.0262362921 |
| GSE48662 | Up | 0.3201759408 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-17-5p | MIMAT0000070 | MIRT050847 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
