HCSGD entry for SHFM1
1. General information
| Official gene symbol | SHFM1 |
|---|---|
| Entrez ID | 7979 |
| Gene full name | split hand/foot malformation (ectrodactyly) type 1 |
| Other gene symbols | DSS1 ECD SEM1 SHFD1 SHSF1 Shfdg1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000502 | Proteasome complex | IDA | cellular_component |
| GO:0000724 | Double-strand break repair via homologous recombination | IEA | biological_process |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0006508 | Proteolysis | IDA | biological_process |
| GO:0008233 | Peptidase activity | IDA | molecular_function |
| GO:0032039 | Integrator complex | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.6779560845 | 0.1296074731 | 0.9999902473 | 0.6930923202 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1359702655 |
| GSE13712_SHEAR | Down | -0.1878684835 |
| GSE13712_STATIC | Down | -0.0613683507 |
| GSE19018 | Up | 0.0431224917 |
| GSE19899_A1 | Down | -0.4027073452 |
| GSE19899_A2 | Down | -0.3353126608 |
| PubMed_21979375_A1 | Down | -0.4462885644 |
| PubMed_21979375_A2 | Down | -0.4611179449 |
| GSE35957 | Down | -0.4440813312 |
| GSE36640 | Down | -0.2994300884 |
| GSE54402 | Up | 0.0855888935 |
| GSE9593 | Down | -0.2175819669 |
| GSE43922 | Down | -0.2922398861 |
| GSE24585 | Down | -0.0117100436 |
| GSE37065 | Up | 0.0803244276 |
| GSE28863_A1 | Up | 0.0189467930 |
| GSE28863_A2 | Down | -0.0633005114 |
| GSE28863_A3 | Up | 0.1848684757 |
| GSE28863_A4 | Up | 0.5789492272 |
| GSE48662 | Up | 0.0573647141 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-26b-5p | MIMAT0000083 | MIRT029635 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-30c-5p | MIMAT0000244 | MIRT047956 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
