HCSGD entry for ZCCHC6
1. General information
| Official gene symbol | ZCCHC6 |
|---|---|
| Entrez ID | 79670 |
| Gene full name | zinc finger, CCHC domain containing 6 |
| Other gene symbols | PAPD6 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003676 | Nucleic acid binding | IEA | molecular_function |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0031123 | RNA 3'-end processing | IDA | biological_process |
| GO:0050265 | RNA uridylyltransferase activity | IDA | molecular_function |
| GO:0071044 | Histone mRNA catabolic process | IMP | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0020129478 | 0.9964675696 | 0.1206897494 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.3263381570 |
| GSE13712_SHEAR | Up | 0.2956485266 |
| GSE13712_STATIC | Up | 0.3527374143 |
| GSE19018 | Up | 0.0551767084 |
| GSE19899_A1 | Up | 0.8251730946 |
| GSE19899_A2 | Up | 0.5001130929 |
| PubMed_21979375_A1 | Up | 0.3942491551 |
| PubMed_21979375_A2 | Up | 1.1278985582 |
| GSE35957 | Up | 0.0117952608 |
| GSE36640 | Up | 0.2908646637 |
| GSE54402 | Up | 0.8383528986 |
| GSE9593 | Up | 0.2633149305 |
| GSE43922 | Up | 1.1103192467 |
| GSE24585 | Up | 0.3513381947 |
| GSE37065 | Up | 0.2792398616 |
| GSE28863_A1 | Up | 0.7066930981 |
| GSE28863_A2 | Up | 0.7678631522 |
| GSE28863_A3 | Down | -0.0228320730 |
| GSE28863_A4 | Up | 0.1529085839 |
| GSE48662 | Down | -0.3099783642 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT017605 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-629-5p | MIMAT0004810 | MIRT037782 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
