HCSGD entry for CHMP6
1. General information
| Official gene symbol | CHMP6 |
|---|---|
| Entrez ID | 79643 |
| Gene full name | charged multivesicular body protein 6 |
| Other gene symbols | VPS20 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0012505 | Endomembrane system | IEA | cellular_component |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0016032 | Viral process | TAS | biological_process |
| GO:0016197 | Endosomal transport | TAS | biological_process |
| GO:0031902 | Late endosome membrane | IEA | cellular_component |
| GO:0047485 | Protein N-terminus binding | IPI | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9246398655 | 0.0556568140 | 0.9999902473 | 0.4439845455 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.2373808271 |
| GSE13712_SHEAR | Down | -0.2010447691 |
| GSE13712_STATIC | Up | 0.3472167558 |
| GSE19018 | Up | 0.0250890409 |
| GSE19899_A1 | Down | -0.4811159589 |
| GSE19899_A2 | Down | -0.4067426452 |
| PubMed_21979375_A1 | Up | 0.7299723476 |
| PubMed_21979375_A2 | Up | 0.0983300912 |
| GSE35957 | Down | -0.1079526880 |
| GSE36640 | Down | -0.0223425817 |
| GSE54402 | Up | 0.0225380740 |
| GSE9593 | Down | -0.3860730147 |
| GSE43922 | Down | -0.2115080167 |
| GSE24585 | Down | -0.1242368909 |
| GSE37065 | Down | -0.3380040392 |
| GSE28863_A1 | Down | -0.1386706295 |
| GSE28863_A2 | Down | -0.2803832631 |
| GSE28863_A3 | Down | -0.3720824523 |
| GSE28863_A4 | Up | 0.0165307789 |
| GSE48662 | Up | 0.1836515069 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-26b-5p | MIMAT0000083 | MIRT028818 | Microarray | Functional MTI (Weak) | 19088304 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
