HCSGD entry for SH3TC2
1. General information
| Official gene symbol | SH3TC2 |
|---|---|
| Entrez ID | 79628 |
| Gene full name | SH3 domain and tetratricopeptide repeats 2 |
| Other gene symbols | CMT4C MNMN |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005886 | Plasma membrane | IEA | cellular_component |
| GO:0031410 | Cytoplasmic vesicle | IEA | cellular_component |
| GO:0032287 | Peripheral nervous system myelin maintenance | IEA | biological_process |
| GO:0033157 | Regulation of intracellular protein transport | IEA | biological_process |
| GO:0055037 | Recycling endosome | IEA | cellular_component |
| GO:1901184 | Regulation of ERBB signaling pathway | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2344450553 | 0.9362081228 | 0.9176338037 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0030846653 |
| GSE13712_SHEAR | Up | 0.0010121587 |
| GSE13712_STATIC | Down | -0.0284907130 |
| GSE19018 | Up | 0.2183670164 |
| GSE19899_A1 | Up | 0.1359804954 |
| GSE19899_A2 | Up | 0.2426600267 |
| PubMed_21979375_A1 | Down | -0.1253855036 |
| PubMed_21979375_A2 | Up | 0.1174547720 |
| GSE35957 | Up | 0.1093155752 |
| GSE36640 | Up | 1.0665539705 |
| GSE54402 | Up | 0.0832468720 |
| GSE9593 | Down | -0.0591229846 |
| GSE43922 | Up | 0.1898166920 |
| GSE24585 | Down | -0.0169206197 |
| GSE37065 | Up | 0.0033442450 |
| GSE28863_A1 | Down | -0.0792452684 |
| GSE28863_A2 | Up | 0.1303194920 |
| GSE28863_A3 | Up | 0.0445234943 |
| GSE28863_A4 | Up | 0.1539515999 |
| GSE48662 | Down | -0.1202042548 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT017312 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-1 | MIMAT0000416 | MIRT023599 | Microarray | Functional MTI (Weak) | 18668037 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
