HCSGD entry for CHPF
1. General information
| Official gene symbol | CHPF |
|---|---|
| Entrez ID | 79586 |
| Gene full name | chondroitin polymerizing factor |
| Other gene symbols | CHSY2 CSS2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000139 | Golgi membrane | TAS | cellular_component |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005759 | Mitochondrial matrix | IEA | cellular_component |
| GO:0005829 | Cytosol | IEA | cellular_component |
| GO:0005975 | Carbohydrate metabolic process | TAS | biological_process |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0016758 | Transferase activity, transferring hexosyl groups | IEA | molecular_function |
| GO:0030203 | Glycosaminoglycan metabolic process | TAS | biological_process |
| GO:0030204 | Chondroitin sulfate metabolic process | TAS | biological_process |
| GO:0030206 | Chondroitin sulfate biosynthetic process | TAS | biological_process |
| GO:0032580 | Golgi cisterna membrane | IEA | cellular_component |
| GO:0044281 | Small molecule metabolic process | TAS | biological_process |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
| GO:0047238 | Glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity | IEA | molecular_function |
| GO:0050510 | N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0631559135 | 0.7106350139 | 0.5429963867 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0039974134 |
| GSE13712_SHEAR | Down | -0.0447771341 |
| GSE13712_STATIC | Down | -0.1404327774 |
| GSE19018 | Up | 0.1247856527 |
| GSE19899_A1 | Down | -0.3362323548 |
| GSE19899_A2 | Up | 0.9919447054 |
| PubMed_21979375_A1 | Up | 0.2118069420 |
| PubMed_21979375_A2 | Up | 0.3990551812 |
| GSE35957 | Up | 0.4296935748 |
| GSE36640 | Up | 0.7828398003 |
| GSE54402 | Down | -0.0605896488 |
| GSE9593 | Up | 0.4986517638 |
| GSE43922 | Up | 0.1010144525 |
| GSE24585 | Up | 0.3540304047 |
| GSE37065 | Up | 0.1256120499 |
| GSE28863_A1 | Up | 0.0779948087 |
| GSE28863_A2 | Up | 0.1835647478 |
| GSE28863_A3 | Down | -0.4620389004 |
| GSE28863_A4 | Down | -0.4181807759 |
| GSE48662 | Up | 0.6742078307 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-375 | MIMAT0000728 | MIRT019908 | Microarray | Functional MTI (Weak) | 20215506 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT029890 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-15b-5p | MIMAT0000417 | MIRT046494 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
