HCSGD entry for FKRP
1. General information
| Official gene symbol | FKRP |
|---|---|
| Entrez ID | 79147 |
| Gene full name | fukutin related protein |
| Other gene symbols | LGMD2I MDC1C MDDGA5 MDDGB5 MDDGC5 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000139 | Golgi membrane | IEA | cellular_component |
| GO:0005615 | Extracellular space | IDA IEA | cellular_component |
| GO:0005791 | Rough endoplasmic reticulum | IDA | cellular_component |
| GO:0005794 | Golgi apparatus | IDA IEA | cellular_component |
| GO:0009101 | Glycoprotein biosynthetic process | IEA | biological_process |
| GO:0016010 | Dystrophin-associated glycoprotein complex | IEA | cellular_component |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0016485 | Protein processing | IEA | biological_process |
| GO:0016740 | Transferase activity | IEA | molecular_function |
| GO:0042383 | Sarcolemma | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0826810494 | 0.7168308537 | 0.6066932293 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1663227858 |
| GSE13712_SHEAR | Down | -0.1013009389 |
| GSE13712_STATIC | Down | -0.3306588922 |
| GSE19018 | Down | -0.3534357483 |
| GSE19899_A1 | Down | -0.1645346939 |
| GSE19899_A2 | Up | 0.8865787395 |
| PubMed_21979375_A1 | Up | 0.4188286196 |
| PubMed_21979375_A2 | Up | 1.4422596169 |
| GSE35957 | Down | -0.3165088715 |
| GSE36640 | Up | 0.7540214503 |
| GSE54402 | Up | 0.0348181936 |
| GSE9593 | Up | 0.5217937224 |
| GSE43922 | Up | 0.0394233457 |
| GSE24585 | Down | -0.0617124822 |
| GSE37065 | Down | -0.0393577305 |
| GSE28863_A1 | Up | 0.1884007333 |
| GSE28863_A2 | Up | 0.1187190798 |
| GSE28863_A3 | Up | 0.3731561756 |
| GSE28863_A4 | Up | 0.0439371122 |
| GSE48662 | Up | 0.1457985181 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-26b-5p | MIMAT0000083 | MIRT029898 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-769-5p | MIMAT0003886 | MIRT039217 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
