HCSGD entry for SECISBP2
1. General information
| Official gene symbol | SECISBP2 |
|---|---|
| Entrez ID | 79048 |
| Gene full name | SECIS binding protein 2 |
| Other gene symbols | SBP2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003730 | MRNA 3'-UTR binding | IDA | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005739 | Mitochondrion | IEA | cellular_component |
| GO:0006412 | Translation | IEA | biological_process |
| GO:0030529 | Ribonucleoprotein complex | IEA | cellular_component |
| GO:0035368 | Selenocysteine insertion sequence binding | IEA | molecular_function |
| GO:0043021 | Ribonucleoprotein complex binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1108727404 | 0.4192671783 | 0.6876469729 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2786967957 |
| GSE13712_SHEAR | Down | -0.0564887080 |
| GSE13712_STATIC | Down | -0.3701379102 |
| GSE19018 | Down | -0.5158116903 |
| GSE19899_A1 | Down | -0.0455908266 |
| GSE19899_A2 | Up | 0.5625358702 |
| PubMed_21979375_A1 | Up | 0.5496035446 |
| PubMed_21979375_A2 | Up | 0.4078166253 |
| GSE35957 | Down | -0.4361302291 |
| GSE36640 | Up | 0.0685462257 |
| GSE54402 | Up | 0.8669788417 |
| GSE9593 | Up | 0.0873166603 |
| GSE43922 | Up | 0.0762721361 |
| GSE24585 | Up | 0.3153249352 |
| GSE37065 | Up | 0.3313702384 |
| GSE28863_A1 | Up | 0.1961780851 |
| GSE28863_A2 | Down | -0.3837774612 |
| GSE28863_A3 | Down | -0.7806542814 |
| GSE28863_A4 | Up | 0.2181444439 |
| GSE48662 | Down | -0.1766435113 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-155-5p | MIMAT0000646 | MIRT020988 | Reporter assay;Other | Functional MTI | 20584899 |
| hsa-miR-142-3p | MIMAT0000434 | MIRT021606 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT030066 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-744-5p | MIMAT0004945 | MIRT037425 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-130b-5p | MIMAT0004680 | MIRT038334 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
