HCSGD entry for SLBP
1. General information
| Official gene symbol | SLBP |
|---|---|
| Entrez ID | 7884 |
| Gene full name | stem-loop binding protein |
| Other gene symbols | HBP |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003729 | MRNA binding | IDA IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005654 | Nucleoplasm | TAS | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0006366 | Transcription from RNA polymerase II promoter | TAS | biological_process |
| GO:0006369 | Termination of RNA polymerase II transcription | TAS | biological_process |
| GO:0006398 | Histone mRNA 3'-end processing | ISS | biological_process |
| GO:0006406 | MRNA export from nucleus | TAS | biological_process |
| GO:0008334 | Histone mRNA metabolic process | TAS | biological_process |
| GO:0010467 | Gene expression | TAS | biological_process |
| GO:0030529 | Ribonucleoprotein complex | TAS | cellular_component |
| GO:0031124 | MRNA 3'-end processing | TAS | biological_process |
| GO:0033260 | Nuclear cell cycle DNA replication | IMP | biological_process |
| GO:0051028 | MRNA transport | IDA | biological_process |
| GO:0071204 | Histone pre-mRNA 3'end processing complex | ISS | cellular_component |
| GO:0071207 | Histone pre-mRNA stem-loop binding | ISS | molecular_function |
| GO:0071208 | Histone pre-mRNA DCP binding | ISS | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8743276737 | 0.0848669769 | 0.9999902473 | 0.5529906258 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2684378395 |
| GSE13712_SHEAR | Up | 0.1704067783 |
| GSE13712_STATIC | Up | 0.0327647268 |
| GSE19018 | Down | -0.4572614397 |
| GSE19899_A1 | Down | -0.3330892304 |
| GSE19899_A2 | Down | -0.0303264328 |
| PubMed_21979375_A1 | Up | 0.8877267251 |
| PubMed_21979375_A2 | Down | -0.0461682511 |
| GSE35957 | Down | -0.5309971761 |
| GSE36640 | Down | -0.6839717105 |
| GSE54402 | Up | 0.2555880050 |
| GSE9593 | Down | -0.0087853715 |
| GSE43922 | Up | 0.0046480564 |
| GSE24585 | Up | 0.0236367635 |
| GSE37065 | Down | -0.0552277738 |
| GSE28863_A1 | Down | -0.2243582568 |
| GSE28863_A2 | Up | 0.1112526800 |
| GSE28863_A3 | Down | -0.3193553397 |
| GSE28863_A4 | Down | -0.1464685547 |
| GSE48662 | Down | -0.9576621121 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1 | MIMAT0000416 | MIRT023573 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT029110 | Microarray | Functional MTI (Weak) | 19088304 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
