HCSGD entry for PRDM2
1. General information
| Official gene symbol | PRDM2 |
|---|---|
| Entrez ID | 7799 |
| Gene full name | PR domain containing 2, with ZNF domain |
| Other gene symbols | HUMHOXY1 KMT8 MTB-ZF RIZ RIZ1 RIZ2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0003700 | Sequence-specific DNA binding transcription factor activity | NAS | molecular_function |
| GO:0005634 | Nucleus | IDA NAS | cellular_component |
| GO:0005794 | Golgi apparatus | IDA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA NAS | biological_process |
| GO:0008270 | Zinc ion binding | NAS | molecular_function |
| GO:0018024 | Histone-lysine N-methyltransferase activity | IEA | molecular_function |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2783741271 | 0.9031053645 | 0.9753841054 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0180806284 |
| GSE13712_SHEAR | Up | 0.3170720055 |
| GSE13712_STATIC | Down | -0.0705547255 |
| GSE19018 | Down | -0.0090287485 |
| GSE19899_A1 | Up | 0.1260310299 |
| GSE19899_A2 | Up | 0.1368051758 |
| PubMed_21979375_A1 | Up | 0.0753363848 |
| PubMed_21979375_A2 | Up | 0.3105778582 |
| GSE35957 | Up | 0.0567118543 |
| GSE36640 | Down | -0.4372999838 |
| GSE54402 | Down | -0.0272254964 |
| GSE9593 | Up | 0.0412742089 |
| GSE43922 | Up | 0.0488352888 |
| GSE24585 | Up | 0.1697082768 |
| GSE37065 | Up | 0.1402308575 |
| GSE28863_A1 | Up | 0.1978052725 |
| GSE28863_A2 | Up | 0.4054155073 |
| GSE28863_A3 | Up | 0.2854672371 |
| GSE28863_A4 | Down | -0.1937367117 |
| GSE48662 | Down | -0.1335164198 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-106b-3p | MIMAT0004672 | MIRT038603 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
