HCSGD entry for ZKSCAN8
1. General information
| Official gene symbol | ZKSCAN8 |
|---|---|
| Entrez ID | 7745 |
| Gene full name | zinc finger with KRAB and SCAN domains 8 |
| Other gene symbols | LD5-1 ZNF192 ZSCAN40 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0003700 | Sequence-specific DNA binding transcription factor activity | IEA | molecular_function |
| GO:0005634 | Nucleus | IDA IEA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.4471066829 | 0.4834846814 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0043846562 |
| GSE13712_SHEAR | Down | -0.0590759627 |
| GSE13712_STATIC | Down | -0.0735921826 |
| GSE19018 | Up | 0.0898170622 |
| GSE19899_A1 | Down | -0.0037266832 |
| GSE19899_A2 | Down | -0.4032000735 |
| PubMed_21979375_A1 | Down | -0.1484152075 |
| PubMed_21979375_A2 | Up | 0.0025004635 |
| GSE35957 | Up | 0.0750506761 |
| GSE36640 | Down | -0.0178263023 |
| GSE54402 | Up | 0.0225294981 |
| GSE9593 | Up | 0.1162920859 |
| GSE43922 | Down | -0.4410244668 |
| GSE24585 | Up | 0.4078672080 |
| GSE37065 | Up | 0.2179122646 |
| GSE28863_A1 | Up | 0.4594698381 |
| GSE28863_A2 | Up | 0.4257783730 |
| GSE28863_A3 | Down | -0.2645787819 |
| GSE28863_A4 | Down | -0.3366212876 |
| GSE48662 | Up | 0.2213279612 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT018290 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-221-3p | MIMAT0000278 | MIRT024197 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-98-5p | MIMAT0000096 | MIRT027721 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-877-5p | MIMAT0004949 | MIRT037331 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
