HCSGD entry for TSPAN4
1. General information
| Official gene symbol | TSPAN4 |
|---|---|
| Entrez ID | 7106 |
| Gene full name | tetraspanin 4 |
| Other gene symbols | NAG-2 NAG2 TETRASPAN TM4SF7 TSPAN-4 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005886 | Plasma membrane | TAS | cellular_component |
| GO:0005887 | Integral component of plasma membrane | TAS | cellular_component |
| GO:0006461 | Protein complex assembly | TAS | biological_process |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0337613427 | 0.6076942517 | 0.4230567349 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.3010418880 |
| GSE13712_SHEAR | Up | 0.4633384078 |
| GSE13712_STATIC | Up | 0.2206924670 |
| GSE19018 | Up | 0.6358693647 |
| GSE19899_A1 | Down | -0.9325460474 |
| GSE19899_A2 | Up | 0.4363478221 |
| PubMed_21979375_A1 | Up | 1.0731275677 |
| PubMed_21979375_A2 | Down | -0.3175507895 |
| GSE35957 | Up | 0.1231152232 |
| GSE36640 | Up | 0.7504259319 |
| GSE54402 | Down | -0.5152447842 |
| GSE9593 | Up | 0.7117902759 |
| GSE43922 | Down | -0.1840373881 |
| GSE24585 | Up | 0.6342815104 |
| GSE37065 | Down | -0.1013461977 |
| GSE28863_A1 | Down | -0.0639036461 |
| GSE28863_A2 | Down | -0.2102736979 |
| GSE28863_A3 | Up | 0.2424754453 |
| GSE28863_A4 | Down | -0.0390946163 |
| GSE48662 | Up | 0.1500516667 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1 | MIMAT0000416 | MIRT004983 | Microarray | Functional MTI (Weak) | 15685193 |
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- mirRecord
- mirRecord
MicroRNA name | mirBase ID | Target site number | MiRNA mature ID | Test method inter | MiRNA regulation site | Reporter target site | Pubmed ID |
|---|---|---|---|---|---|---|---|
| hsa-miR-1 | MIMAT0000416 | NA | hsa-miR-1 | 15685193 |
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6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
