HCSGD entry for TAF13

1. General information

Official gene symbolTAF13
Entrez ID6884
Gene full nameTAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa
Other gene symbolsTAF(II)18 TAF2K TAFII-18 TAFII18
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in PPI subnetwork.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0003677DNA bindingIEAmolecular_function
GO:0003700Sequence-specific DNA binding transcription factor activityNASmolecular_function
GO:0005515Protein bindingIPImolecular_function
GO:0005634NucleusIDAcellular_component
GO:0005654NucleoplasmTAScellular_component
GO:0005669Transcription factor TFIID complexIDA NAScellular_component
GO:0005730NucleolusIDAcellular_component
GO:0006352DNA-templated transcription, initiationNASbiological_process
GO:0006366Transcription from RNA polymerase II promoterIC TASbiological_process
GO:0006367Transcription initiation from RNA polymerase II promoterIC TASbiological_process
GO:0006368Transcription elongation from RNA polymerase II promoterTASbiological_process
GO:0008022Protein C-terminus bindingIPImolecular_function
GO:0010467Gene expressionTASbiological_process
GO:0016032Viral processTASbiological_process
GO:0046982Protein heterodimerization activityIEAmolecular_function
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.00196389190.94779829030.11938013861.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.3977351992
GSE13712_SHEARUp0.4767857767
GSE13712_STATICUp0.3035471794
GSE19018Down-0.2791894852
GSE19899_A1Up0.5242587624
GSE19899_A2Up1.3811077829
PubMed_21979375_A1Up1.3104105120
PubMed_21979375_A2Up0.7892619718
GSE35957Up0.9588817821
GSE36640Up0.6667499594
GSE54402Up0.3797957157
GSE9593Up0.3508931006
GSE43922Up0.7543327571
GSE24585Up0.1624971301
GSE37065Up0.1045577093
GSE28863_A1Down-0.6668053658
GSE28863_A2Down-0.4872944214
GSE28863_A3Down-0.0326016617
GSE28863_A4Up0.3758214860
GSE48662Up1.0013157249

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

    • mirTarBase
No target information from mirTarBase
    • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.