HCSGD entry for SURF4
1. General information
| Official gene symbol | SURF4 |
|---|---|
| Entrez ID | 6836 |
| Gene full name | surfeit 4 |
| Other gene symbols | ERV29 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000139 | Golgi membrane | IEA | cellular_component |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005789 | Endoplasmic reticulum membrane | IEA | cellular_component |
| GO:0005793 | Endoplasmic reticulum-Golgi intermediate compartment | IDA | cellular_component |
| GO:0007030 | Golgi organization | IMP | biological_process |
| GO:0010638 | Positive regulation of organelle organization | IMP | biological_process |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0032527 | Protein exit from endoplasmic reticulum | IMP | biological_process |
| GO:0033116 | Endoplasmic reticulum-Golgi intermediate compartment membrane | IEA | cellular_component |
| GO:0034498 | Early endosome to Golgi transport | IMP | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.6003973367 | 0.5963628624 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.3613339546 |
| GSE13712_SHEAR | Down | -0.0755321634 |
| GSE13712_STATIC | Up | 0.0060607218 |
| GSE19018 | Down | -0.1175989788 |
| GSE19899_A1 | Down | -0.2217651390 |
| GSE19899_A2 | Up | 0.1644380981 |
| PubMed_21979375_A1 | Up | 0.1495268739 |
| PubMed_21979375_A2 | Down | -0.3603260714 |
| GSE35957 | Down | -0.2441153636 |
| GSE36640 | Up | 0.2946983350 |
| GSE54402 | Up | 0.1414578473 |
| GSE9593 | Down | -0.0351227722 |
| GSE43922 | Up | 0.0796862520 |
| GSE24585 | Down | -0.1050684569 |
| GSE37065 | Down | -0.2040172585 |
| GSE28863_A1 | - | - |
| GSE28863_A2 | - | - |
| GSE28863_A3 | - | - |
| GSE28863_A4 | - | - |
| GSE48662 | Up | 0.0532870154 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-124-3p | MIMAT0000422 | MIRT001831 | Microarray//qRT-PCR//qRT-PCR;Other | Functional MTI (Weak) | 16549876 |
| hsa-miR-193b-3p | MIMAT0002819 | MIRT016415 | Proteomics | Functional MTI (Weak) | 21512034 |
| hsa-miR-34a-5p | MIMAT0000255 | MIRT025424 | Proteomics | Functional MTI (Weak) | 21566225 |
| hsa-miR-877-5p | MIMAT0004949 | MIRT037305 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-744-5p | MIMAT0004945 | MIRT037674 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-93-3p | MIMAT0004509 | MIRT038907 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049234 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-17-5p | MIMAT0000070 | MIRT050908 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
