HCSGD entry for SSR4
1. General information
| Official gene symbol | SSR4 |
|---|---|
| Entrez ID | 6748 |
| Gene full name | signal sequence receptor, delta |
| Other gene symbols | TRAPD |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005783 | Endoplasmic reticulum | IEA | cellular_component |
| GO:0005784 | Sec61 translocon complex | NAS | cellular_component |
| GO:0006412 | Translation | TAS | biological_process |
| GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | TAS | biological_process |
| GO:0010467 | Gene expression | TAS | biological_process |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0044267 | Cellular protein metabolic process | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.3384029178 | 0.3578088598 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.3463576141 |
| GSE13712_SHEAR | Down | -0.1996059720 |
| GSE13712_STATIC | Down | -0.2069812760 |
| GSE19018 | Up | 0.6168314920 |
| GSE19899_A1 | Down | -0.2046871688 |
| GSE19899_A2 | Down | -0.1305796552 |
| PubMed_21979375_A1 | Up | 0.8573606084 |
| PubMed_21979375_A2 | Down | -0.4393410092 |
| GSE35957 | Down | -0.1386282528 |
| GSE36640 | Up | 0.6323918571 |
| GSE54402 | Up | 0.0385537155 |
| GSE9593 | Up | 0.1622379497 |
| GSE43922 | Up | 0.0292626196 |
| GSE24585 | Down | -0.1271123173 |
| GSE37065 | Down | -0.0445672961 |
| GSE28863_A1 | Down | -0.3377176438 |
| GSE28863_A2 | Down | -0.2561061120 |
| GSE28863_A3 | Up | 0.0844810731 |
| GSE28863_A4 | Up | 0.0812493963 |
| GSE48662 | Up | 0.2278425563 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-331-3p | MIMAT0000760 | MIRT043411 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
