HCSGD entry for SNRPD3

1. General information

Official gene symbolSNRPD3
Entrez ID6634
Gene full namesmall nuclear ribonucleoprotein D3 polypeptide 18kDa
Other gene symbolsSMD3 Sm-D3
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

color bar
This gene isn't in PPI subnetwork.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0000387Spliceosomal snRNP assemblyIDA TASbiological_process
GO:0000398MRNA splicing, via spliceosomeIC TASbiological_process
GO:0005515Protein bindingIPImolecular_function
GO:0005654NucleoplasmTAScellular_component
GO:0005681Spliceosomal complexTAScellular_component
GO:0005683U7 snRNPIDAcellular_component
GO:0005685U1 snRNPIDAcellular_component
GO:0005687U4 snRNPIDAcellular_component
GO:0005689U12-type spliceosomal complexIDAcellular_component
GO:0005829CytosolIDA TAScellular_component
GO:0006366Transcription from RNA polymerase II promoterTASbiological_process
GO:0006369Termination of RNA polymerase II transcriptionTASbiological_process
GO:0008334Histone mRNA metabolic processTASbiological_process
GO:0008380RNA splicingTASbiological_process
GO:0010467Gene expressionTASbiological_process
GO:0016070RNA metabolic processTASbiological_process
GO:0019013Viral nucleocapsidIEAcellular_component
GO:0019899Enzyme bindingIPImolecular_function
GO:0030529Ribonucleoprotein complexIEAcellular_component
GO:0030532Small nuclear ribonucleoprotein complexTAScellular_component
GO:0031124MRNA 3'-end processingTASbiological_process
GO:0034660NcRNA metabolic processTASbiological_process
GO:0034709MethylosomeIDAcellular_component
GO:0034715PICln-Sm protein complexIDAcellular_component
GO:0034719SMN-Sm protein complexIDAcellular_component
GO:0071013Catalytic step 2 spliceosomeIDAcellular_component
GO:0071208Histone pre-mRNA DCP bindingISSmolecular_function
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.50958403180.32142074770.99999024731.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.1922209432
GSE13712_SHEARDown-0.0665987002
GSE13712_STATICDown-0.0197595344
GSE19018Up0.0973823533
GSE19899_A1Up0.3086430387
GSE19899_A2Up0.0441675410
PubMed_21979375_A1Up0.4192474704
PubMed_21979375_A2Down-0.0693455122
GSE35957Down-0.3544322685
GSE36640Down-0.3123223204
GSE54402Up0.4333073729
GSE9593Down-0.6026361985
GSE43922Up0.0568722410
GSE24585Down-0.0122611446
GSE37065Down-0.0327279832
GSE28863_A1Down-0.1818237432
GSE28863_A2Down-0.4193647748
GSE28863_A3Down-0.2276415755
GSE28863_A4Up0.2173198532
GSE48662Down-0.2660941693

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

    • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-124-3pMIMAT0000422MIRT023211Proteomics;MicroarrayNon-Functional MTI (Weak)18668037
hsa-miR-183-5pMIMAT0000261MIRT024990SequencingFunctional MTI (Weak)20371350
hsa-miR-24-3pMIMAT0000080MIRT030561MicroarrayFunctional MTI (Weak)19748357
hsa-miR-500a-5pMIMAT0004773MIRT037997CLASHFunctional MTI (Weak)23622248
hsa-miR-193b-3pMIMAT0002819MIRT041313CLASHFunctional MTI (Weak)23622248
hsa-miR-330-3pMIMAT0000751MIRT043833CLASHFunctional MTI (Weak)23622248
hsa-miR-363-3pMIMAT0000707MIRT044049CLASHFunctional MTI (Weak)23622248
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    • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.