HCSGD entry for SNRPA
1. General information
| Official gene symbol | SNRPA |
|---|---|
| Entrez ID | 6626 |
| Gene full name | small nuclear ribonucleoprotein polypeptide A |
| Other gene symbols | Mud1 U1-A U1A |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000166 | Nucleotide binding | IEA | molecular_function |
| GO:0000398 | MRNA splicing, via spliceosome | IC IEA TAS | biological_process |
| GO:0003723 | RNA binding | IDA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005654 | Nucleoplasm | TAS | cellular_component |
| GO:0005681 | Spliceosomal complex | IDA | cellular_component |
| GO:0005685 | U1 snRNP | IDA | cellular_component |
| GO:0008380 | RNA splicing | TAS | biological_process |
| GO:0010467 | Gene expression | TAS | biological_process |
| GO:0017069 | SnRNA binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9942400783 | 0.0019738916 | 0.9999902473 | 0.0849670473 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.4173118442 |
| GSE13712_SHEAR | Up | 0.1599572177 |
| GSE13712_STATIC | Down | -0.1550690134 |
| GSE19018 | Down | -0.0165534872 |
| GSE19899_A1 | Down | -1.3753305473 |
| GSE19899_A2 | Down | -0.4011725118 |
| PubMed_21979375_A1 | Down | -1.3763200123 |
| PubMed_21979375_A2 | Down | -1.4809390519 |
| GSE35957 | Down | -1.5910862833 |
| GSE36640 | Down | -1.7298529862 |
| GSE54402 | Up | 0.0206826381 |
| GSE9593 | Down | -0.7545324488 |
| GSE43922 | Down | -0.5013281134 |
| GSE24585 | Down | -0.0881105643 |
| GSE37065 | Down | -0.3842282486 |
| GSE28863_A1 | Up | 0.0185076259 |
| GSE28863_A2 | Down | -0.1063901733 |
| GSE28863_A3 | Down | -0.2241025586 |
| GSE28863_A4 | Up | 0.0928196494 |
| GSE48662 | Down | -0.6597687839 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Name | Drug | Accession number |
|---|---|---|
| Malonic acid | DB02175 | EXPT02179 |
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1307-3p | MIMAT0005951 | MIRT035815 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-320c | MIMAT0005793 | MIRT036163 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT052317 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
