HCSGD entry for SMARCD3
1. General information
| Official gene symbol | SMARCD3 |
|---|---|
| Entrez ID | 6604 |
| Gene full name | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 |
| Other gene symbols | BAF60C CRACD3 Rsc6p |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000790 | Nuclear chromatin | IDA | cellular_component |
| GO:0002052 | Positive regulation of neuroblast proliferation | IDA | biological_process |
| GO:0003139 | Secondary heart field specification | IEA | biological_process |
| GO:0003219 | Cardiac right ventricle formation | IEA | biological_process |
| GO:0003407 | Neural retina development | IEP | biological_process |
| GO:0003713 | Transcription coactivator activity | NAS | molecular_function |
| GO:0005102 | Receptor binding | IPI | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005654 | Nucleoplasm | TAS | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0006337 | Nucleosome disassembly | IDA | biological_process |
| GO:0006338 | Chromatin remodeling | IC IDA | biological_process |
| GO:0006351 | Transcription, DNA-templated | IDA | biological_process |
| GO:0006357 | Regulation of transcription from RNA polymerase II promoter | IMP NAS | biological_process |
| GO:0008134 | Transcription factor binding | IPI | molecular_function |
| GO:0016514 | SWI/SNF complex | IDA NAS | cellular_component |
| GO:0016922 | Ligand-dependent nuclear receptor binding | IPI | molecular_function |
| GO:0030374 | Ligand-dependent nuclear receptor transcription coactivator activity | IMP | molecular_function |
| GO:0035257 | Nuclear hormone receptor binding | IPI | molecular_function |
| GO:0042692 | Muscle cell differentiation | IEA | biological_process |
| GO:0043393 | Regulation of protein binding | IEA | biological_process |
| GO:0044255 | Cellular lipid metabolic process | TAS | biological_process |
| GO:0044281 | Small molecule metabolic process | TAS | biological_process |
| GO:0045893 | Positive regulation of transcription, DNA-templated | IDA | biological_process |
| GO:0071564 | NpBAF complex | IDA ISS | cellular_component |
| GO:0071565 | NBAF complex | ISS | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9852768968 | 0.0219675088 | 0.9999902473 | 0.2856193086 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.2566927641 |
| GSE13712_SHEAR | Down | -0.3215160208 |
| GSE13712_STATIC | Down | -0.4373995450 |
| GSE19018 | Down | -0.0352166519 |
| GSE19899_A1 | Down | -0.7212280918 |
| GSE19899_A2 | Down | -0.6741704806 |
| PubMed_21979375_A1 | Down | -0.4655022561 |
| PubMed_21979375_A2 | Down | -0.6254016710 |
| GSE35957 | Down | -0.1610087722 |
| GSE36640 | Up | 0.1894623384 |
| GSE54402 | Down | -0.2856518279 |
| GSE9593 | Up | 0.1539952741 |
| GSE43922 | Down | -0.0286888281 |
| GSE24585 | Up | 0.2300215991 |
| GSE37065 | Down | -0.2853505655 |
| GSE28863_A1 | Down | -0.1306706075 |
| GSE28863_A2 | Down | -0.0966320657 |
| GSE28863_A3 | Down | -0.1323035308 |
| GSE28863_A4 | Down | -0.1648045288 |
| GSE48662 | Down | -0.0462940132 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirTarBase
- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
