HCSGD entry for SMARCD2
1. General information
| Official gene symbol | SMARCD2 |
|---|---|
| Entrez ID | 6603 |
| Gene full name | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 |
| Other gene symbols | BAF60B CRACD2 Rsc6p |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003713 | Transcription coactivator activity | NAS | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0006337 | Nucleosome disassembly | IDA | biological_process |
| GO:0006338 | Chromatin remodeling | IDA | biological_process |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006357 | Regulation of transcription from RNA polymerase II promoter | NAS | biological_process |
| GO:0016514 | SWI/SNF complex | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.7542463774 | 0.3287954219 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0058093497 |
| GSE13712_SHEAR | Up | 0.2408086573 |
| GSE13712_STATIC | Up | 0.8207593397 |
| GSE19018 | Up | 0.0119249303 |
| GSE19899_A1 | Down | -0.2838681309 |
| GSE19899_A2 | Up | 0.0085479721 |
| PubMed_21979375_A1 | Up | 0.2162561026 |
| PubMed_21979375_A2 | Down | -0.2157052165 |
| GSE35957 | Down | -0.4249848396 |
| GSE36640 | Down | -0.1842505957 |
| GSE54402 | Down | -0.0913040731 |
| GSE9593 | Down | -0.4407644402 |
| GSE43922 | - | - |
| GSE24585 | - | - |
| GSE37065 | - | - |
| GSE28863_A1 | - | - |
| GSE28863_A2 | - | - |
| GSE28863_A3 | - | - |
| GSE28863_A4 | - | - |
| GSE48662 | Up | 0.2825424863 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-125b-5p | MIMAT0000423 | MIRT004999 | Microarray | Functional MTI (Weak) | 17891175 |
| hsa-miR-155-5p | MIMAT0000646 | MIRT020668 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-423-3p | MIMAT0001340 | MIRT042546 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-324-5p | MIMAT0000761 | MIRT043231 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049267 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
