HCSGD entry for SMARCD1
1. General information
| Official gene symbol | SMARCD1 |
|---|---|
| Entrez ID | 6602 |
| Gene full name | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 |
| Other gene symbols | BAF60A CRACD1 Rsc6p |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003713 | Transcription coactivator activity | NAS | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0006337 | Nucleosome disassembly | IDA | biological_process |
| GO:0006338 | Chromatin remodeling | IDA IMP | biological_process |
| GO:0006357 | Regulation of transcription from RNA polymerase II promoter | NAS | biological_process |
| GO:0007399 | Nervous system development | IEA | biological_process |
| GO:0016514 | SWI/SNF complex | IDA | cellular_component |
| GO:0032947 | Protein complex scaffold | IDA | molecular_function |
| GO:0048096 | Chromatin-mediated maintenance of transcription | IMP | biological_process |
| GO:0071564 | NpBAF complex | IEA ISS | cellular_component |
| GO:0071565 | NBAF complex | IEA ISS | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.5729817788 | 0.3211958056 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1031274488 |
| GSE13712_SHEAR | Down | -0.0822648147 |
| GSE13712_STATIC | Down | -0.1280114456 |
| GSE19018 | Down | -0.2293216803 |
| GSE19899_A1 | Down | -0.2472287812 |
| GSE19899_A2 | Up | 0.2136192019 |
| PubMed_21979375_A1 | Up | 0.2535511519 |
| PubMed_21979375_A2 | Up | 0.5234309186 |
| GSE35957 | Up | 0.2175327924 |
| GSE36640 | Down | -0.3933126693 |
| GSE54402 | Up | 0.0254816121 |
| GSE9593 | Down | -0.1442511068 |
| GSE43922 | Up | 0.0014223168 |
| GSE24585 | Down | -0.0754156774 |
| GSE37065 | Down | -0.0273249795 |
| GSE28863_A1 | Up | 0.2524918186 |
| GSE28863_A2 | Up | 0.1401078365 |
| GSE28863_A3 | Down | -0.2107850093 |
| GSE28863_A4 | Down | -0.0092427113 |
| GSE48662 | Up | 0.1495571383 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-7-5p | MIMAT0000252 | MIRT025886 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-7-5p | MIMAT0000252 | MIRT025886 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-101-3p | MIMAT0000099 | MIRT027347 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT032437 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT032437 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-744-5p | MIMAT0004945 | MIRT037419 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-425-5p | MIMAT0003393 | MIRT039323 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7c-5p | MIMAT0000064 | MIRT051748 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-223-3p | MIMAT0000280 | MIRT052651 | Microarray//qRT-PCR | Functional MTI (Weak) | 23757351 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
