HCSGD entry for GPBP1
1. General information
| Official gene symbol | GPBP1 |
|---|---|
| Entrez ID | 65056 |
| Gene full name | GC-rich promoter binding protein 1 |
| Other gene symbols | GPBP SSH6 VASCULIN |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0003700 | Sequence-specific DNA binding transcription factor activity | IEA | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0045893 | Positive regulation of transcription, DNA-templated | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.6109614414 | 0.1745514988 | 0.9999902473 | 0.8087236888 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1576482096 |
| GSE13712_SHEAR | Down | -0.2138115846 |
| GSE13712_STATIC | Down | -0.1131669337 |
| GSE19018 | Down | -0.1368671811 |
| GSE19899_A1 | Down | -0.0799187346 |
| GSE19899_A2 | Down | -0.1777780750 |
| PubMed_21979375_A1 | Up | 0.5501370018 |
| PubMed_21979375_A2 | Down | -0.0151655392 |
| GSE35957 | Down | -0.4185461795 |
| GSE36640 | Down | -0.6611175823 |
| GSE54402 | Up | 0.1044568009 |
| GSE9593 | Down | -0.3727456047 |
| GSE43922 | Up | 0.0468905938 |
| GSE24585 | Up | 0.2710680882 |
| GSE37065 | Up | 0.3527753903 |
| GSE28863_A1 | Up | 0.2689376886 |
| GSE28863_A2 | Up | 0.2962895061 |
| GSE28863_A3 | Down | -0.7890197286 |
| GSE28863_A4 | Down | -0.1958576272 |
| GSE48662 | Up | 0.0132826846 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-484 | MIMAT0002174 | MIRT041884 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-365a-3p | MIMAT0000710 | MIRT044039 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-25-3p | MIMAT0000081 | MIRT050359 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
