HCSGD entry for VPS16
1. General information
| Official gene symbol | VPS16 |
|---|---|
| Entrez ID | 64601 |
| Gene full name | vacuolar protein sorting 16 homolog (S. cerevisiae) |
| Other gene symbols | hVPS16 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0005765 | Lysosomal membrane | IDA | cellular_component |
| GO:0005769 | Early endosome | IDA | cellular_component |
| GO:0005770 | Late endosome | IDA | cellular_component |
| GO:0005884 | Actin filament | IEA | cellular_component |
| GO:0006886 | Intracellular protein transport | IEA | biological_process |
| GO:0030424 | Axon | IEA | cellular_component |
| GO:0030897 | HOPS complex | IDA | cellular_component |
| GO:0031902 | Late endosome membrane | IEA | cellular_component |
| GO:0043025 | Neuronal cell body | IEA | cellular_component |
| GO:0051015 | Actin filament binding | IEA | molecular_function |
| GO:0055037 | Recycling endosome | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9873264732 | 0.0393117929 | 0.9999902473 | 0.3738870758 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0493466784 |
| GSE13712_SHEAR | Down | -0.0954907930 |
| GSE13712_STATIC | Up | 0.0647849261 |
| GSE19018 | Up | 0.1441189078 |
| GSE19899_A1 | Down | -0.6870909663 |
| GSE19899_A2 | Down | -0.7521805544 |
| PubMed_21979375_A1 | Down | -0.8267014601 |
| PubMed_21979375_A2 | Down | -0.3750271341 |
| GSE35957 | Down | -0.7585777024 |
| GSE36640 | Down | -0.3562316479 |
| GSE54402 | Down | -0.2430195219 |
| GSE9593 | Down | -0.0222088617 |
| GSE43922 | - | - |
| GSE24585 | - | - |
| GSE37065 | - | - |
| GSE28863_A1 | - | - |
| GSE28863_A2 | - | - |
| GSE28863_A3 | - | - |
| GSE28863_A4 | - | - |
| GSE48662 | Up | 0.0562780207 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT019172 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
