HCSGD entry for SGCA
1. General information
| Official gene symbol | SGCA |
|---|---|
| Entrez ID | 6442 |
| Gene full name | sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein) |
| Other gene symbols | 50-DAG A2 ADL DAG2 DMDA2 LGMD2D SCARMD1 adhalin |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005509 | Calcium ion binding | IEA | molecular_function |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0005856 | Cytoskeleton | IEA | cellular_component |
| GO:0005911 | Cell-cell junction | IEA | cellular_component |
| GO:0006936 | Muscle contraction | TAS | biological_process |
| GO:0007517 | Muscle organ development | TAS | biological_process |
| GO:0016010 | Dystrophin-associated glycoprotein complex | TAS | cellular_component |
| GO:0016012 | Sarcoglycan complex | IEA | cellular_component |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0042383 | Sarcolemma | IEA | cellular_component |
| GO:0045121 | Membrane raft | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.4109941112 | 0.5680444284 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0738706275 |
| GSE13712_SHEAR | Up | 0.0366719918 |
| GSE13712_STATIC | Up | 0.0957020080 |
| GSE19018 | Up | 0.1054013415 |
| GSE19899_A1 | Down | -0.0820698036 |
| GSE19899_A2 | Up | 0.1065627028 |
| PubMed_21979375_A1 | Down | -0.0865918255 |
| PubMed_21979375_A2 | Down | -0.0187389769 |
| GSE35957 | Down | -0.1235166811 |
| GSE36640 | Up | 0.0807126250 |
| GSE54402 | Up | 0.0014274102 |
| GSE9593 | Up | 0.0824551741 |
| GSE43922 | Up | 0.0916614245 |
| GSE24585 | Down | -0.0844240593 |
| GSE37065 | Up | 0.4067451080 |
| GSE28863_A1 | Up | 0.0426845339 |
| GSE28863_A2 | Down | -0.4324139428 |
| GSE28863_A3 | Up | 0.5536110111 |
| GSE28863_A4 | Down | -0.0437695318 |
| GSE48662 | Up | 0.1775678864 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirTarBase
- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
