HCSGD entry for PAPD5
1. General information
| Official gene symbol | PAPD5 |
|---|---|
| Entrez ID | 64282 |
| Gene full name | PAP associated domain containing 5 |
| Other gene symbols | TRF4-2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003674 | Molecular_function | ND | molecular_function |
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0003887 | DNA-directed DNA polymerase activity | IEA | molecular_function |
| GO:0004652 | Polynucleotide adenylyltransferase activity | IEA | molecular_function |
| GO:0005575 | Cellular_component | ND | cellular_component |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0007067 | Mitosis | IEA | biological_process |
| GO:0016779 | Nucleotidyltransferase activity | IEA | molecular_function |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
| GO:0071044 | Histone mRNA catabolic process | IMP | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1868446716 | 0.3251280157 | 0.8432679355 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.5621484773 |
| GSE13712_SHEAR | Up | 0.2718661251 |
| GSE13712_STATIC | Up | 0.1046526028 |
| GSE19018 | Up | 0.2505279395 |
| GSE19899_A1 | Up | 0.2141186354 |
| GSE19899_A2 | Up | 0.5848965506 |
| PubMed_21979375_A1 | Up | 0.4883009238 |
| PubMed_21979375_A2 | Up | 0.7367819561 |
| GSE35957 | Down | -0.2645188906 |
| GSE36640 | Up | 0.0055539648 |
| GSE54402 | Up | 0.2516062546 |
| GSE9593 | Up | 0.1331386477 |
| GSE43922 | Up | 0.1137372773 |
| GSE24585 | Down | -0.5898049270 |
| GSE37065 | Up | 0.0681504863 |
| GSE28863_A1 | Down | -0.2646871189 |
| GSE28863_A2 | Down | -0.0060054727 |
| GSE28863_A3 | Down | -0.7543835019 |
| GSE28863_A4 | Up | 0.1663618578 |
| GSE48662 | Down | -0.0845039674 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-192-5p | MIMAT0000222 | MIRT026642 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-769-3p | MIMAT0003887 | MIRT039087 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-186-5p | MIMAT0000456 | MIRT045081 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-10a-5p | MIMAT0000253 | MIRT047566 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-96-5p | MIMAT0000095 | MIRT048717 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
