HCSGD entry for LHX5
1. General information
| Official gene symbol | LHX5 |
|---|---|
| Entrez ID | 64211 |
| Gene full name | LIM homeobox 5 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003700 | Sequence-specific DNA binding transcription factor activity | IEA | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0021527 | Spinal cord association neuron differentiation | IEA | biological_process |
| GO:0021702 | Cerebellar Purkinje cell differentiation | IEA | biological_process |
| GO:0021766 | Hippocampus development | IEA | biological_process |
| GO:0021846 | Cell proliferation in forebrain | IEA | biological_process |
| GO:0021879 | Forebrain neuron differentiation | IEA | biological_process |
| GO:0021937 | Cerebellar Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation | IEA | biological_process |
| GO:0043565 | Sequence-specific DNA binding | IEA | molecular_function |
| GO:0045893 | Positive regulation of transcription, DNA-templated | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.4312722845 | 0.8660659891 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0948734060 |
| GSE13712_SHEAR | Down | -0.1255161571 |
| GSE13712_STATIC | Down | -0.0431292832 |
| GSE19018 | Up | 0.1305247737 |
| GSE19899_A1 | Down | -0.0836491813 |
| GSE19899_A2 | Up | 0.0514852014 |
| PubMed_21979375_A1 | Up | 0.1608675661 |
| PubMed_21979375_A2 | Up | 0.1820780892 |
| GSE35957 | Up | 0.2579652984 |
| GSE36640 | Up | 0.1659784553 |
| GSE54402 | Up | 0.1009926481 |
| GSE9593 | Up | 0.0970277978 |
| GSE43922 | Up | 0.0256974901 |
| GSE24585 | Down | -0.0215326119 |
| GSE37065 | Down | -0.0658682013 |
| GSE28863_A1 | Down | -0.1749913528 |
| GSE28863_A2 | Down | -0.1223717904 |
| GSE28863_A3 | Up | 0.4108214244 |
| GSE28863_A4 | Up | 0.2132993686 |
| GSE48662 | Up | 0.0387284338 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirTarBase
- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
