HCSGD entry for SNX16
1. General information
| Official gene symbol | SNX16 |
|---|---|
| Entrez ID | 64089 |
| Gene full name | sorting nexin 16 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005764 | Lysosome | IEA | cellular_component |
| GO:0005769 | Early endosome | IDA | cellular_component |
| GO:0005770 | Late endosome | IDA | cellular_component |
| GO:0006622 | Protein targeting to lysosome | IMP | biological_process |
| GO:0007154 | Cell communication | IEA | biological_process |
| GO:0008333 | Endosome to lysosome transport | IMP | biological_process |
| GO:0031313 | Extrinsic component of endosome membrane | IDA | cellular_component |
| GO:0031901 | Early endosome membrane | IEA | cellular_component |
| GO:0031902 | Late endosome membrane | IEA | cellular_component |
| GO:0035091 | Phosphatidylinositol binding | IDA IEA | molecular_function |
| GO:0042802 | Identical protein binding | IPI | molecular_function |
| GO:0045022 | Early endosome to late endosome transport | IEA IMP | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1757445462 | 0.1990074161 | 0.8230634762 | 0.8626604414 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0524475670 |
| GSE13712_SHEAR | Up | 0.5088935463 |
| GSE13712_STATIC | Up | 0.3481584500 |
| GSE19018 | Down | -0.1205034254 |
| GSE19899_A1 | Up | 0.2347920281 |
| GSE19899_A2 | Down | -0.0478853888 |
| PubMed_21979375_A1 | Up | 1.0847094686 |
| PubMed_21979375_A2 | Up | 0.2397021730 |
| GSE35957 | Down | -0.7789311164 |
| GSE36640 | Down | -0.6285750944 |
| GSE54402 | Up | 0.3454789903 |
| GSE9593 | Down | -0.0640265180 |
| GSE43922 | Up | 0.1558503150 |
| GSE24585 | Down | -0.0297786035 |
| GSE37065 | Up | 0.1963341609 |
| GSE28863_A1 | Down | -0.3882838667 |
| GSE28863_A2 | Up | 0.2335892748 |
| GSE28863_A3 | Down | -0.5848819907 |
| GSE28863_A4 | Down | -0.0206165779 |
| GSE48662 | Down | -0.5507281299 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-124-3p | MIMAT0000422 | MIRT022579 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-103a-3p | MIMAT0000101 | MIRT027106 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-96-5p | MIMAT0000095 | MIRT027924 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031652 | Sequencing | Functional MTI (Weak) | 20371350 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
