HCSGD entry for TRAPPC2
1. General information
| Official gene symbol | TRAPPC2 |
|---|---|
| Entrez ID | 6399 |
| Gene full name | trafficking protein particle complex 2 |
| Other gene symbols | MIP2A SEDL SEDT TRAPPC2P1 TRS20 ZNF547L hYP38334 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001501 | Skeletal system development | IMP | biological_process |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005622 | Intracellular | IEA | cellular_component |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005783 | Endoplasmic reticulum | IEA | cellular_component |
| GO:0005794 | Golgi apparatus | IEA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | IDA | biological_process |
| GO:0006888 | ER to Golgi vesicle-mediated transport | IEA NAS | biological_process |
| GO:0008134 | Transcription factor binding | IPI | molecular_function |
| GO:0044325 | Ion channel binding | IPI | molecular_function |
| GO:0048471 | Perinuclear region of cytoplasm | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8586643175 | 0.1517834809 | 0.9999902473 | 0.7522598192 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.2136050117 |
| GSE13712_SHEAR | Up | 0.0416634275 |
| GSE13712_STATIC | Up | 0.2957595756 |
| GSE19018 | Up | 0.1238522253 |
| GSE19899_A1 | Down | -0.2543466569 |
| GSE19899_A2 | Down | -0.2547359235 |
| PubMed_21979375_A1 | Down | -0.8562217926 |
| PubMed_21979375_A2 | Down | -0.3296965659 |
| GSE35957 | Up | 0.3471981429 |
| GSE36640 | Up | 0.2182309367 |
| GSE54402 | Down | -0.1034857822 |
| GSE9593 | Down | -0.0140213713 |
| GSE43922 | Down | -0.1683850286 |
| GSE24585 | Up | 0.1077700936 |
| GSE37065 | Down | -0.0798951406 |
| GSE28863_A1 | Up | 0.0963351563 |
| GSE28863_A2 | Up | 0.0810487278 |
| GSE28863_A3 | Down | -0.4033377738 |
| GSE28863_A4 | Up | 0.0648431952 |
| GSE48662 | Down | -0.1260068950 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-21-5p | MIMAT0000076 | MIRT030856 | Microarray | Functional MTI (Weak) | 18591254 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049775 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-25-3p | MIMAT0000081 | MIRT050252 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
