HCSGD entry for SEC13
1. General information
| Official gene symbol | SEC13 |
|---|---|
| Entrez ID | 6396 |
| Gene full name | SEC13 homolog (S. cerevisiae) |
| Other gene symbols | D3S1231E SEC13L1 SEC13R npp-20 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000139 | Golgi membrane | TAS | cellular_component |
| GO:0000278 | Mitotic cell cycle | TAS | biological_process |
| GO:0000776 | Kinetochore | IDA | cellular_component |
| GO:0002474 | Antigen processing and presentation of peptide antigen via MHC class I | TAS | biological_process |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005635 | Nuclear envelope | IDA | cellular_component |
| GO:0005789 | Endoplasmic reticulum membrane | TAS | cellular_component |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0006886 | Intracellular protein transport | NAS | biological_process |
| GO:0006888 | ER to Golgi vesicle-mediated transport | TAS | biological_process |
| GO:0012507 | ER to Golgi transport vesicle membrane | TAS | cellular_component |
| GO:0018279 | Protein N-linked glycosylation via asparagine | TAS | biological_process |
| GO:0019886 | Antigen processing and presentation of exogenous peptide antigen via MHC class II | TAS | biological_process |
| GO:0031080 | Nuclear pore outer ring | IDA NAS | cellular_component |
| GO:0043687 | Post-translational protein modification | TAS | biological_process |
| GO:0044267 | Cellular protein metabolic process | TAS | biological_process |
| GO:0048208 | COPII vesicle coating | TAS | biological_process |
| GO:0051028 | MRNA transport | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9800756734 | 0.0396408837 | 0.9999902473 | 0.3751301941 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1344224963 |
| GSE13712_SHEAR | Down | -0.1949122436 |
| GSE13712_STATIC | Down | -0.0866475667 |
| GSE19018 | Down | -0.2341818290 |
| GSE19899_A1 | Down | -0.7907881884 |
| GSE19899_A2 | Down | -0.2564551386 |
| PubMed_21979375_A1 | Up | 0.0889860525 |
| PubMed_21979375_A2 | Down | -0.4346309031 |
| GSE35957 | Down | -0.5652288621 |
| GSE36640 | Up | 0.0902900153 |
| GSE54402 | Up | 0.1764427412 |
| GSE9593 | Down | -0.0879522070 |
| GSE43922 | Down | -0.0742067887 |
| GSE24585 | Down | -0.1834319024 |
| GSE37065 | Down | -0.2968796377 |
| GSE28863_A1 | Up | 0.0491149454 |
| GSE28863_A2 | Down | -0.1436263989 |
| GSE28863_A3 | Down | -0.6114969403 |
| GSE28863_A4 | Down | -0.1837625693 |
| GSE48662 | Up | 0.0411455379 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-652-3p | MIMAT0003322 | MIRT039516 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-505-3p | MIMAT0002876 | MIRT041012 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-99a-5p | MIMAT0000097 | MIRT048659 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
