HCSGD entry for SCO1
1. General information
| Official gene symbol | SCO1 |
|---|---|
| Entrez ID | 6341 |
| Gene full name | SCO1 cytochrome c oxidase assembly protein |
| Other gene symbols | SCOD1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005507 | Copper ion binding | IEA | molecular_function |
| GO:0005739 | Mitochondrion | IEA TAS | cellular_component |
| GO:0005743 | Mitochondrial inner membrane | IEA | cellular_component |
| GO:0006091 | Generation of precursor metabolites and energy | TAS | biological_process |
| GO:0006825 | Copper ion transport | IEA | biological_process |
| GO:0006878 | Cellular copper ion homeostasis | IEA | biological_process |
| GO:0008535 | Respiratory chain complex IV assembly | IEA | biological_process |
| GO:0030016 | Myofibril | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0904863227 | 0.3416388055 | 0.6328641795 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.4206610420 |
| GSE13712_SHEAR | Up | 0.0335949675 |
| GSE13712_STATIC | Up | 0.2219197925 |
| GSE19018 | Down | -0.9918274342 |
| GSE19899_A1 | Down | -0.1955271747 |
| GSE19899_A2 | Up | 0.7293476364 |
| PubMed_21979375_A1 | Up | 1.5367340317 |
| PubMed_21979375_A2 | Up | 0.7347240521 |
| GSE35957 | Down | -0.2226254066 |
| GSE36640 | Up | 0.2381874900 |
| GSE54402 | Down | -0.0843053704 |
| GSE9593 | Down | -0.2284952561 |
| GSE43922 | Up | 0.2469189148 |
| GSE24585 | Down | -0.4484524562 |
| GSE37065 | Up | 0.0237502971 |
| GSE28863_A1 | Up | 0.4490913069 |
| GSE28863_A2 | Down | -0.0286876184 |
| GSE28863_A3 | Up | 0.1957594615 |
| GSE28863_A4 | Down | -0.0827783386 |
| GSE48662 | Down | -0.3235702662 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-193b-3p | MIMAT0002819 | MIRT041476 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
