HCSGD entry for RPS29
1. General information
| Official gene symbol | RPS29 |
|---|---|
| Entrez ID | 6235 |
| Gene full name | ribosomal protein S29 |
| Other gene symbols | S29 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000184 | Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | TAS | biological_process |
| GO:0003735 | Structural constituent of ribosome | IDA | molecular_function |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0006412 | Translation | IC TAS | biological_process |
| GO:0006413 | Translational initiation | TAS | biological_process |
| GO:0006414 | Translational elongation | TAS | biological_process |
| GO:0006415 | Translational termination | TAS | biological_process |
| GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | TAS | biological_process |
| GO:0008270 | Zinc ion binding | IDA | molecular_function |
| GO:0010467 | Gene expression | TAS | biological_process |
| GO:0015935 | Small ribosomal subunit | IDA | cellular_component |
| GO:0016032 | Viral process | TAS | biological_process |
| GO:0016070 | RNA metabolic process | TAS | biological_process |
| GO:0016071 | MRNA metabolic process | TAS | biological_process |
| GO:0019058 | Viral life cycle | TAS | biological_process |
| GO:0019083 | Viral transcription | TAS | biological_process |
| GO:0022627 | Cytosolic small ribosomal subunit | IDA | cellular_component |
| GO:0044267 | Cellular protein metabolic process | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.6020036625 | 0.0882520383 | 0.9999902473 | 0.5634962406 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1815692014 |
| GSE13712_SHEAR | Down | -0.6193683485 |
| GSE13712_STATIC | Down | -0.3788920202 |
| GSE19018 | Up | 0.0066149948 |
| GSE19899_A1 | Down | -0.0232814630 |
| GSE19899_A2 | Up | 0.3677555008 |
| PubMed_21979375_A1 | Up | 1.1537207196 |
| PubMed_21979375_A2 | Down | -0.0414333606 |
| GSE35957 | Up | 0.2136862646 |
| GSE36640 | Up | 0.1930438703 |
| GSE54402 | Up | 0.0006823128 |
| GSE9593 | Up | 0.5678789935 |
| GSE43922 | Down | -0.0143942123 |
| GSE24585 | Down | -0.1819236920 |
| GSE37065 | Down | -0.2544786341 |
| GSE28863_A1 | Down | -0.2733301371 |
| GSE28863_A2 | Down | -1.0817765883 |
| GSE28863_A3 | Down | -0.4942012861 |
| GSE28863_A4 | Up | 0.0576621813 |
| GSE48662 | Down | -0.0613017443 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-484 | MIMAT0002174 | MIRT016617 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-96-5p | MIMAT0000095 | MIRT027890 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-652-3p | MIMAT0003322 | MIRT039486 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-10a-5p | MIMAT0000253 | MIRT047627 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
