HCSGD entry for RPS28
1. General information
| Official gene symbol | RPS28 |
|---|---|
| Entrez ID | 6234 |
| Gene full name | ribosomal protein S28 |
| Other gene symbols | S28 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000184 | Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | TAS | biological_process |
| GO:0003735 | Structural constituent of ribosome | IEA | molecular_function |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0006364 | RRNA processing | IMP | biological_process |
| GO:0006412 | Translation | IC TAS | biological_process |
| GO:0006413 | Translational initiation | TAS | biological_process |
| GO:0006414 | Translational elongation | TAS | biological_process |
| GO:0006415 | Translational termination | TAS | biological_process |
| GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | TAS | biological_process |
| GO:0010467 | Gene expression | TAS | biological_process |
| GO:0015935 | Small ribosomal subunit | IDA | cellular_component |
| GO:0016032 | Viral process | TAS | biological_process |
| GO:0016070 | RNA metabolic process | TAS | biological_process |
| GO:0016071 | MRNA metabolic process | TAS | biological_process |
| GO:0019058 | Viral life cycle | TAS | biological_process |
| GO:0019083 | Viral transcription | TAS | biological_process |
| GO:0022627 | Cytosolic small ribosomal subunit | IDA | cellular_component |
| GO:0042274 | Ribosomal small subunit biogenesis | IMP | biological_process |
| GO:0044267 | Cellular protein metabolic process | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9099848980 | 0.2514516774 | 0.9999902473 | 0.9630801745 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0092848153 |
| GSE13712_SHEAR | Down | -0.3438751433 |
| GSE13712_STATIC | Down | -0.3565531551 |
| GSE19018 | Down | -0.0825706725 |
| GSE19899_A1 | Up | 0.0072383609 |
| GSE19899_A2 | Down | -0.0128243079 |
| PubMed_21979375_A1 | Up | 0.0742051965 |
| PubMed_21979375_A2 | Down | -0.1595780233 |
| GSE35957 | Down | -0.0733291208 |
| GSE36640 | Down | -0.2694420778 |
| GSE54402 | Up | 0.0546312301 |
| GSE9593 | Up | 0.1053958897 |
| GSE43922 | Up | 0.1199926775 |
| GSE24585 | Up | 0.0421831003 |
| GSE37065 | Down | -0.1234048720 |
| GSE28863_A1 | Down | -0.1081254356 |
| GSE28863_A2 | Up | 0.3812911345 |
| GSE28863_A3 | Down | -0.2981207956 |
| GSE28863_A4 | Up | 0.0125318707 |
| GSE48662 | Down | -0.3256030358 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1307-3p | MIMAT0005951 | MIRT035825 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-425-5p | MIMAT0003393 | MIRT039341 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92b-3p | MIMAT0003218 | MIRT040626 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-125b-5p | MIMAT0000423 | MIRT046092 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049327 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-25-3p | MIMAT0000081 | MIRT050253 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
