HCSGD entry for RPS15A
1. General information
| Official gene symbol | RPS15A |
|---|---|
| Entrez ID | 6210 |
| Gene full name | ribosomal protein S15a |
| Other gene symbols | S15a |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000184 | Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | TAS | biological_process |
| GO:0003723 | RNA binding | NAS | molecular_function |
| GO:0003735 | Structural constituent of ribosome | IDA IEA NAS | molecular_function |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0005840 | Ribosome | IEA | cellular_component |
| GO:0006412 | Translation | IC IEA NAS TAS | biological_process |
| GO:0006413 | Translational initiation | TAS | biological_process |
| GO:0006414 | Translational elongation | TAS | biological_process |
| GO:0006415 | Translational termination | TAS | biological_process |
| GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | TAS | biological_process |
| GO:0008284 | Positive regulation of cell proliferation | IDA | biological_process |
| GO:0009615 | Response to virus | IDA | biological_process |
| GO:0010467 | Gene expression | TAS | biological_process |
| GO:0016032 | Viral process | TAS | biological_process |
| GO:0016070 | RNA metabolic process | TAS | biological_process |
| GO:0016071 | MRNA metabolic process | TAS | biological_process |
| GO:0019058 | Viral life cycle | TAS | biological_process |
| GO:0019083 | Viral transcription | TAS | biological_process |
| GO:0022627 | Cytosolic small ribosomal subunit | IDA | cellular_component |
| GO:0044267 | Cellular protein metabolic process | TAS | biological_process |
| GO:0045787 | Positive regulation of cell cycle | IDA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9909844003 | 0.0056677368 | 0.9999902473 | 0.1520698267 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1227143948 |
| GSE13712_SHEAR | Down | -0.8728739681 |
| GSE13712_STATIC | Down | -0.5023085440 |
| GSE19018 | Down | -0.0907359516 |
| GSE19899_A1 | Down | -0.2131155169 |
| GSE19899_A2 | Down | -0.7008967319 |
| PubMed_21979375_A1 | Down | -0.5467755349 |
| PubMed_21979375_A2 | Down | -0.5506239289 |
| GSE35957 | Up | 0.0417649237 |
| GSE36640 | Down | -0.2454877595 |
| GSE54402 | Down | -0.2760390398 |
| GSE9593 | Down | -0.0110701190 |
| GSE43922 | Down | -0.0863533601 |
| GSE24585 | Up | 0.0165360799 |
| GSE37065 | Down | -0.4168708255 |
| GSE28863_A1 | Up | 0.3934355376 |
| GSE28863_A2 | Down | -0.4196789511 |
| GSE28863_A3 | Down | -1.1549365072 |
| GSE28863_A4 | Down | -0.1019038964 |
| GSE48662 | Down | -0.2527337613 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-455-3p | MIMAT0004784 | MIRT037867 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-423-5p | MIMAT0004748 | MIRT038026 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-27b-3p | MIMAT0000419 | MIRT046168 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-100-5p | MIMAT0000098 | MIRT048568 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049566 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-17-5p | MIMAT0000070 | MIRT050832 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7a-5p | MIMAT0000062 | MIRT052449 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
